Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.2e-79 299.7 146 100.0
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 3.0e-49 198.7 121 80.2
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.7e-49 197.6 117 78.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.7e-49 197.6 117 78.6
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 2.5e-48 195.7 114 80.7
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 4.3e-48 194.9 142 71.1
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 1.3e-47 193.4 118 77.1
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 8.2e-47 190.7 112 81.2
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.4e-46 189.9 97 88.7
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 4.0e-46 188.3 118 76.3
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 9.0e-46 187.2 118 75.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.5e-45 186.4 123 77.2
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 4.5e-45 184.9 118 73.7
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 7.6e-45 184.1 110 77.3
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.0e-44 183.7 114 76.3
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.3e-44 183.3 116 75.0
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.2e-44 182.6 119 75.6
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.8e-44 181.8 119 75.6
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 4.9e-44 181.4 123 72.4
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.2e-43 178.7 115 71.3
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.2e-43 178.3 118 72.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 4.2e-43 178.3 119 74.8
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 7.1e-43 177.6 106 77.4
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 9.3e-43 177.2 105 77.1
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 9.3e-43 177.2 110 71.8
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.1e-42 176.0 105 78.1
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.7e-42 175.6 104 78.8
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 3.5e-42 175.3 117 71.8
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 6.0e-42 174.5 124 66.9
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 6.0e-42 174.5 102 80.4
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 6.0e-42 174.5 106 75.5
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.9e-42 174.1 102 80.4
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 7.9e-42 174.1 97 82.5
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.0e-41 173.7 115 71.3
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.3e-41 173.3 104 76.9
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.8e-41 172.9 97 81.4
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 2.3e-41 172.6 104 76.9
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.0e-41 172.2 114 71.1
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 3.0e-41 172.2 104 77.9
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 3.0e-41 172.2 104 77.9
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.9e-41 171.8 114 71.1
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.9e-41 171.8 102 79.4
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 3.9e-41 171.8 102 78.4
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 5.1e-41 171.4 113 76.1
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 5.1e-41 171.4 106 73.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-40 170.2 109 71.6
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.1e-40 170.2 129 66.7
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.1e-40 170.2 125 65.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.5e-40 169.9 105 75.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.5e-40 169.9 106 75.5
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.9e-40 169.5 114 71.1
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.9e-40 169.5 97 80.4
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.9e-40 169.5 110 74.5
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 2.5e-40 169.1 113 73.5
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 2.5e-40 169.1 102 75.5
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 4.3e-40 168.3 96 80.2
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 5.7e-40 167.9 140 64.3
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-39 166.8 109 69.7
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.6e-39 166.4 117 68.4
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-39 166.4 115 73.9
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-39 166.4 115 73.9
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.2e-39 166.0 104 75.0
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.8e-39 165.6 118 69.5
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 2.8e-39 165.6 105 72.4
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 3.7e-39 165.2 119 70.6
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 6.3e-39 164.5 106 75.5
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 8.2e-39 164.1 110 71.8
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.4e-38 163.3 119 68.9
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 3.1e-38 162.2 110 74.5
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 4.1e-38 161.8 112 74.1
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 4.1e-38 161.8 101 76.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 5.3e-38 161.4 96 77.1
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 5.3e-38 161.4 107 73.8
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.9e-38 161.0 105 72.4
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 6.9e-38 161.0 109 68.8
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.0e-38 160.6 115 73.0
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.5e-37 159.8 98 76.5
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.5e-37 159.8 110 71.8
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 2.0e-37 159.5 104 74.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.0e-37 159.5 105 68.6
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.6e-37 159.1 118 66.1
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.6e-37 159.1 117 66.7
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 3.4e-37 158.7 115 67.0
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 7.7e-37 157.5 106 72.6
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.0e-36 157.1 116 64.7
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.0e-36 157.1 118 63.6
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.0e-36 157.1 107 69.2
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.0e-36 157.1 109 72.5
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.0e-36 157.1 121 64.5
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.3e-36 156.8 116 67.2
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.3e-36 156.8 118 64.4
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.3e-36 156.8 107 70.1
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.7e-36 156.4 118 64.4
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.7e-36 156.4 107 69.2
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.7e-36 156.4 105 70.5
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.7e-36 156.4 97 77.3
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.2e-36 156.0 118 62.7
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.2e-36 156.0 107 69.2
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.2e-36 156.0 118 62.7
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 2.9e-36 155.6 111 65.8
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 2.9e-36 155.6 105 69.5
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 2.9e-36 155.6 105 69.5
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 3.8e-36 155.2 110 66.4
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.8e-36 155.2 118 63.6
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.8e-36 155.2 107 68.2
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 5.0e-36 154.8 118 63.6
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 5.0e-36 154.8 110 68.2
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 6.5e-36 154.5 118 63.6
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 6.5e-36 154.5 118 62.7
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 6.5e-36 154.5 118 62.7
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 6.5e-36 154.5 111 64.9
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 6.5e-36 154.5 118 62.7
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 8.5e-36 154.1 98 75.5
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 8.5e-36 154.1 114 63.2
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 8.5e-36 154.1 103 68.9
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 8.5e-36 154.1 112 64.3
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-35 153.7 113 63.7
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.1e-35 153.7 107 69.2
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.4e-35 153.3 103 68.9
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.4e-35 153.3 103 68.9
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-35 152.9 113 63.7
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.9e-35 152.9 113 63.7
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.9e-35 152.9 113 63.7
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.9e-35 152.9 93 76.3
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.5e-35 152.5 103 68.9
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 5.5e-35 151.4 112 67.0
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 9.4e-35 150.6 110 64.5
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.2e-34 150.2 116 62.9
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.1e-34 149.4 116 64.7
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 2.1e-34 149.4 105 66.7
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 2.1e-34 149.4 74 87.8
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.1e-34 149.4 113 61.9
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.6e-34 148.3 113 61.9
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.6e-34 148.3 113 61.9
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 6.1e-34 147.9 105 68.6
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.0e-33 147.1 78 82.1
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 3.0e-33 145.6 102 64.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.5e-32 143.3 83 79.5
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.7e-31 138.7 118 57.6
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 1.5e-29 133.3 82 73.2
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 2.0e-29 132.9 100 64.0
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.0e-28 128.3 120 56.7
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 3.2e-27 125.6 106 60.4
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.8e-25 119.8 70 75.7
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 5.7e-24 114.8 99 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 3.1e-22 109.0 69 71.0
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 3.1e-22 109.0 63 77.8
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.0e-20 104.0 101 54.5
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.7e-20 103.2 77 66.2
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 5.0e-20 101.7 127 49.6
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 5.2e-17 91.7 73 53.4
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 8.2e-15 84.3 69 59.4
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 8.2e-15 84.3 51 74.5
Nn7g36119 Nelumbo nucifera HOM05D004651 ORTHO05D279213 1.2e-13 80.5 63 74.6
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 7.7e-13 77.8 103 43.7
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 4.2e-11 72.0 57 61.4
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 2.7e-10 69.3 51 62.7
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 1.1e-06 57.4 49 59.2


User provided reference genes

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