Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15442 Nelumbo nucifera HOM05D002569 ORTHO05D020107 7.5e-58 226.9 107 100.0
Lj3g0027520 Lotus japonicus HOM05D002569 ORTHO05D006728 7.1e-24 114.0 212 36.8
MD11G1029600 Malus domestica HOM05D002569 ORTHO05D006728 1.2e-23 113.2 213 36.2
TAR369G0083 Trochodendron aralioides HOM05D002569 ORTHO05D006728 1.0e-22 110.2 213 36.6
TAR376G0263 Trochodendron aralioides HOM05D002569 ORTHO05D006728 1.0e-22 110.2 213 36.6
GSVIVG01025300001 Vitis vinifera HOM05D002569 ORTHO05D006728 5.1e-22 107.8 213 35.2
Prupe.6G023900 Prunus persica HOM05D002569 ORTHO05D006728 6.7e-22 107.5 213 34.7
MD03G1024500 Malus domestica HOM05D002569 ORTHO05D006728 8.7e-22 107.1 213 35.7
Potri.003G204900 Populus trichocarpa HOM05D002569 ORTHO05D006728 8.7e-22 107.1 213 35.2
ATR0605G270 Amborella trichopoda HOM05D002569 ORTHO05D006728 1.9e-21 105.9 188 37.8
arahy.Tifrunner.gnm1.ann1.IW7M0D Arachis hypogaea HOM05D002569 ORTHO05D006728 1.9e-21 105.9 210 36.2
arahy.Tifrunner.gnm1.ann1.VAJP8X Arachis hypogaea HOM05D002569 ORTHO05D006728 1.9e-21 105.9 210 36.2
Nitab4.5_0000492g0100 Nicotiana tabacum HOM05D002569 ORTHO05D006728 3.3e-21 105.1 193 37.3
arahy.Tifrunner.gnm1.ann1.24VX5E Arachis hypogaea HOM05D002569 ORTHO05D006728 4.3e-21 104.8 213 35.7
Nn7g36161 Nelumbo nucifera HOM05D002569 ORTHO05D006728 4.3e-21 104.8 213 35.2
Atru.chr3.2604 Acer truncatum HOM05D002569 ORTHO05D006728 2.1e-20 102.4 213 34.7
Gohir.A05G068400 Gossypium hirsutum HOM05D002569 ORTHO05D006728 2.1e-20 102.4 213 34.3
Gorai.009G072400 Gossypium raimondii HOM05D002569 ORTHO05D006728 2.1e-20 102.4 213 34.3
CSS0021823 Camellia sinensis var. sinensis HOM05D002569 ORTHO05D006728 2.8e-20 102.1 213 34.3
CSS0039826 Camellia sinensis var. sinensis HOM05D002569 ORTHO05D006728 2.8e-20 102.1 213 34.3
Medtr2g098110 Medicago truncatula HOM05D002569 ORTHO05D006728 2.8e-20 102.1 212 34.9
Cc07_g19440 Coffea canephora HOM05D002569 ORTHO05D006728 4.8e-20 101.3 213 34.7
Ciclev10030987m.g Citrus clementina HOM05D002569 ORTHO05D006728 1.4e-19 99.8 199 34.2
Duzib150G1640 Durio zibethinus HOM05D002569 ORTHO05D006728 1.4e-19 99.8 213 34.3
FAN25G0456 Fragaria x ananassa HOM05D002569 ORTHO05D006728 1.4e-19 99.8 213 33.3
Lj1A347T9 Lonicera japonica HOM05D002569 ORTHO05D006728 1.4e-19 99.8 212 34.4
Aqoxy7G03862 Aquilegia oxysepala HOM05D002569 ORTHO05D006728 1.8e-19 99.4 212 33.5
Eucgr.J00787 Eucalyptus grandis HOM05D002569 ORTHO05D006728 1.8e-19 99.4 216 34.3
Lalb_Chr14g0372161 Lupinus albus HOM05D002569 ORTHO05D006728 1.8e-19 99.4 213 34.7
QL01p005206 Quercus lobata HOM05D002569 ORTHO05D006728 1.8e-19 99.4 211 33.6
Sabra03G0151500 Salix brachista HOM05D002569 ORTHO05D006728 1.8e-19 99.4 213 34.3
Gohir.D05G071400 Gossypium hirsutum HOM05D002569 ORTHO05D006728 2.4e-19 99.0 213 33.8
arahy.Tifrunner.gnm1.ann1.89IDD9 Arachis hypogaea HOM05D002569 ORTHO05D006728 3.1e-19 98.6 229 33.2
Ca_01289_v3 Cicer arietinum L. HOM05D002569 ORTHO05D006728 3.1e-19 98.6 212 34.0
Rhsim13G0223300 Rhododendron simsii HOM05D002569 ORTHO05D006728 3.1e-19 98.6 212 34.0
Aa31LG1G18950 Aethionema arabicum HOM05D002569 ORTHO05D006728 4.0e-19 98.2 213 32.4
AUR62019274 Chenopodium quinoa HOM05D002569 ORTHO05D006728 5.3e-19 97.8 212 34.4
FAN17G2435 Fragaria x ananassa HOM05D002569 ORTHO05D006728 6.9e-19 97.4 213 32.9
RcHm_v2.0_Chr5g0077091 Rosa chinensis HOM05D002569 ORTHO05D006728 6.9e-19 97.4 213 33.3
FAN16G0653 Fragaria x ananassa HOM05D002569 ORTHO05D006728 9.0e-19 97.1 209 33.0
FAN21G0039 Fragaria x ananassa HOM05D002569 ORTHO05D006728 9.0e-19 97.1 211 32.2
THA.LOC104799090 Tarenaya hassleriana HOM05D002569 ORTHO05D006728 9.0e-19 97.1 213 32.9
Actinidia16317 Actinidia chinensis HOM05D002569 ORTHO05D006728 1.2e-18 96.7 213 33.3
AUR62000100 Chenopodium quinoa HOM05D002569 ORTHO05D006728 1.2e-18 96.7 212 34.4
CsaV3_4G024160 Cucumis sativus L. HOM05D002569 ORTHO05D006728 1.2e-18 96.7 212 33.0
TPR.G6861 Trifolium pratense HOM05D002569 ORTHO05D006728 1.2e-18 96.7 212 34.0
CAN.G288.3 Capsicum annuum HOM05D002569 ORTHO05D006728 1.5e-18 96.3 212 33.5
ClCG02G023340 Citrullus lanatus HOM05D002569 ORTHO05D006728 1.5e-18 96.3 212 33.0
Glyma.13G340700 Glycine max HOM05D002569 ORTHO05D006728 1.5e-18 96.3 213 33.3
Solyc10g079290.2 Solanum lycopersicum HOM05D002569 ORTHO05D006728 1.5e-18 96.3 212 33.5
Sopen10g029940 Solanum pennellii HOM05D002569 ORTHO05D006728 1.5e-18 96.3 212 33.5
PGSC0003DMG400008142 Solanum tuberosum HOM05D002569 ORTHO05D006728 1.5e-18 96.3 212 33.5
Glyma.15G033700 Glycine max HOM05D002569 ORTHO05D006728 2.0e-18 95.9 213 33.3
MBI19_g25424_MAGBIO Magnolia biondii HOM05D002569 ORTHO05D006728 2.6e-18 95.5 208 33.2
FvH4_3g43030 Fragaria vesca HOM05D002569 ORTHO05D006728 4.5e-18 94.7 213 32.4
Carub.0006s1797 Capsella rubella HOM05D002569 ORTHO05D006728 5.8e-18 94.4 213 31.9
AL6G31130 Arabidopsis lyrata HOM05D002569 ORTHO05D006728 7.6e-18 94.0 213 31.9
Solyc11g062070.3 Solanum lycopersicum HOM05D002569 ORTHO05D006728 7.6e-18 94.0 213 32.9
Sopen11g024050 Solanum pennellii HOM05D002569 ORTHO05D006728 7.6e-18 94.0 213 32.9
Sp6g24770 Schrenkiella parvula HOM05D002569 ORTHO05D006728 9.9e-18 93.6 213 31.5
CARHR193290 Cardamine hirsuta HOM05D002569 ORTHO05D006728 1.3e-17 93.2 213 31.9
Thhalv10012770m.g Eutrema salsugineum HOM05D002569 ORTHO05D006728 1.7e-17 92.8 213 31.5
FAN11G1818 Fragaria x ananassa HOM05D002569 ORTHO05D006728 1.7e-17 92.8 208 31.7
Hma1.2p1_0027F.1_g017160 Hydrangea macrophylla HOM05D002569 ORTHO05D006728 1.7e-17 92.8 210 32.4
PSO339G1449 Papaver somniferum HOM05D002569 ORTHO05D006728 1.7e-17 92.8 212 32.5
PSO384G3146 Papaver somniferum HOM05D002569 ORTHO05D006728 1.7e-17 92.8 212 32.5
Phvul.L010043 Phaseolus vulgaris HOM05D002569 ORTHO05D006728 1.7e-17 92.8 213 32.4
PGR119G1481 Punica granatum HOM05D002569 ORTHO05D006728 1.7e-17 92.8 214 33.6
Thecc.09G228700 Theobroma cacao HOM05D002569 ORTHO05D006728 2.2e-17 92.4 213 32.9
Peaxi162Scf00029g02913 Petunia axillaris HOM05D002569 ORTHO05D006728 2.9e-17 92.0 212 32.1
EL10Ac4g10295 Beta vulgaris HOM05D002569 ORTHO05D006728 4.9e-17 91.3 212 33.0
A10p20090 Brassica napus HOM05D002569 ORTHO05D006728 4.9e-17 91.3 211 30.8
C09p56560 Brassica napus HOM05D002569 ORTHO05D006728 4.9e-17 91.3 211 30.8
BolC9t58521H Brassica oleracea HOM05D002569 ORTHO05D006728 4.9e-17 91.3 211 30.8
BraA10t44083Z Brassica rapa HOM05D002569 ORTHO05D006728 4.9e-17 91.3 211 30.8
Migut.D00584 Erythranthe guttata HOM05D002569 ORTHO05D006728 4.9e-17 91.3 212 32.1
VMungo1080G1486 Vigna mungo HOM05D002569 ORTHO05D006728 6.4e-17 90.9 213 31.9
Lsat_1_v5_gn_6_47261 Lactuca sativa HOM05D002569 ORTHO05D006728 8.4e-17 90.5 212 31.6
Duzib170G0706 Durio zibethinus HOM05D002569 ORTHO05D006728 1.4e-16 89.7 213 31.5
AT5G19620 Arabidopsis thaliana HOM05D002569 ORTHO05D006728 1.9e-16 89.4 213 30.5
Sed0019540 Sechium edule HOM05D002569 ORTHO05D006728 1.9e-16 89.4 212 32.1
Cfa009745 Carpinus fangiana HOM05D002569 ORTHO05D006728 2.4e-16 89.0 213 31.9
Haze_23104 Corylus avellana HOM05D002569 ORTHO05D006728 4.2e-16 88.2 213 31.9
Haze_23108 Corylus avellana HOM05D002569 ORTHO05D006728 4.2e-16 88.2 213 31.9
Ciclev10014959m.g Citrus clementina HOM05D002569 ORTHO05D006728 7.1e-16 87.4 213 31.5
Mapoly0001s0065 Marchantia polymorpha HOM05D002569 ORTHO05D006728 7.1e-16 87.4 212 31.1
Sc09g0000580 Simmondsia chinensis HOM05D002569 ORTHO05D006728 7.1e-16 87.4 213 32.4
Ah.06g193680 Amaranthus hybridus HOM05D002569 ORTHO05D006728 1.2e-15 86.7 213 32.4
SalBow8G4903 Salvia bowleyana HOM05D002569 ORTHO05D006728 1.2e-15 86.7 212 30.2
Cpa.g.sc84.73 Carica papaya HOM05D002569 ORTHO05D006728 3.5e-15 85.1 203 32.0
DCAR_018962 Daucus carota HOM05D002569 ORTHO05D006728 3.5e-15 85.1 212 30.7
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 3.5e-15 85.1 207 30.9
AagrBONN_evm.TU.Sc2ySwM_117.1129 Anthoceros agrestis HOM05D002569 ORTHO05D006728 4.6e-15 84.7 212 30.7
Manes.14G001500 Manihot esculenta HOM05D002569 ORTHO05D006728 7.9e-15 84.0 57 70.2
Potri.001G019000 Populus trichocarpa HOM05D002569 ORTHO05D006728 1.3e-14 83.2 57 70.2
Os02g0196300 Oryza sativa ssp. japonica HOM05D002569 ORTHO05D006728 3.9e-14 81.6 213 30.5
SGA_v2.0_scaffold247G44859 Striga asiatica HOM05D002569 ORTHO05D006728 3.9e-14 81.6 212 30.7
vmacro04197 Vaccinium macrocarpon HOM05D002569 ORTHO05D006728 5.1e-14 81.3 57 70.2
Pp3c3_3200 Physcomitrium patens HOM05D002569 ORTHO05D006728 6.7e-14 80.9 212 29.2
Zm00001eb205950 Zea mays HOM05D002569 ORTHO05D006728 8.7e-14 80.5 213 29.6
Nitab4.5_0002026g0040 Nicotiana tabacum HOM05D002569 ORTHO05D006728 1.5e-13 79.7 90 48.9
Gohir.A08G013300 Gossypium hirsutum HOM05D002569 ORTHO05D006728 3.3e-13 78.6 56 67.9
Gohir.D08G023700 Gossypium hirsutum HOM05D002569 ORTHO05D006728 3.3e-13 78.6 212 30.2
CANSAT54G1339 Cannabis sativa HOM05D002569 ORTHO05D006728 4.3e-13 78.2 208 28.8
SMO351G0337 Selaginella moellendorffii HOM05D002569 ORTHO05D006728 5.6e-13 77.8 222 28.8
CBR_g49553 Chara braunii HOM05D002569 ORTHO05D006728 7.4e-13 77.4 212 28.3
Dinv22194 Davidia involucrata HOM05D002569 ORTHO05D006728 7.4e-13 77.4 57 68.4
vmacro04196 Vaccinium macrocarpon HOM05D002569 ORTHO05D020107 7.4e-13 77.4 44 79.5
CiPaw.13G163000 Carya illinoinensis HOM05D002569 ORTHO05D006728 9.6e-13 77.0 57 68.4
CDE05G0083 Ceratophyllum demersum HOM05D002569 ORTHO05D020107 9.6e-13 77.0 44 81.8
Lalb_Chr22g0352351 Lupinus albus HOM05D002569 ORTHO05D020107 9.6e-13 77.0 44 79.5
COL.COLO4_24854 Corchorus olitorius HOM05D002569 ORTHO05D006728 1.3e-12 76.6 44 81.8
Zm00001eb236320 Zea mays HOM05D002569 ORTHO05D006728 1.6e-12 76.3 44 79.5
HanXRQChr17g0534151 Helianthus annuus HOM05D002569 ORTHO05D006728 2.8e-12 75.5 212 28.8
Gorai.004G019000 Gossypium raimondii HOM05D002569 ORTHO05D006728 3.7e-12 75.1 56 64.3
Oeu043299.1 Olea europaea HOM05D002569 ORTHO05D006728 4.8e-12 74.7 51 68.6
Gohir.A07G054600 Gossypium hirsutum HOM05D002569 ORTHO05D006728 8.2e-12 73.9 50 68.0
BcaC04g24225 Brassica carinata HOM05D002569 ORTHO05D006728 1.1e-11 73.6 66 53.0
Psat5g287000 Pisum sativum HOM05D002569 ORTHO05D006728 1.1e-11 73.6 56 66.1
Hund07528 Selenicereus undatus HOM05D002569 ORTHO05D006728 1.1e-11 73.6 56 69.6
BcaC04g24226 Brassica carinata HOM05D002569 ORTHO05D020107 2.4e-11 72.4 42 76.2
PGSC0003DMG400025529 Solanum tuberosum HOM05D000867 ORTHO05D000864 4.0e-11 71.6 63 57.1
ECA233G6009 Erigeron canadensis HOM05D002569 ORTHO05D006728 1.2e-10 70.1 197 28.9
Gohir.A07G164700 Gossypium hirsutum HOM05D002569 ORTHO05D006728 1.2e-10 70.1 50 66.0
MELO3C014605.2 Cucumis melo HOM05D002569 ORTHO05D006728 2.6e-10 68.9 56 60.7
vmacro21166 Vaccinium macrocarpon HOM05D002569 ORTHO05D020107 1.0e-09 67.0 49 67.3
Hund07529 Selenicereus undatus HOM05D002569 ORTHO05D020107 2.2e-09 65.9 44 68.2
Cre09.g388097 Chlamydomonas reinhardtii HOM05D002569 ORTHO05D006728 1.2e-07 60.1 39 64.1
PRCOL_00003853 Prasinoderma coloniale HOM05D002569 ORTHO05D006728 1.2e-07 60.1 42 59.5
EL10Ac7g16480 Beta vulgaris HOM05D000001 ORTHO05D000424 6.7e-06 54.3 38 71.1


User provided reference genes

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