Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.1e-136 487.6 276 100.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 88.1
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 88.1
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 6.1e-120 434.5 277 86.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.9
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.5e-118 429.9 277 85.9
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.5e-118 429.9 277 86.6
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 87.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 84.8
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 85.9
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 85.6
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 5.7e-118 427.9 277 85.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 85.6
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 7.5e-118 427.6 275 85.1
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.3e-117 426.8 277 85.6
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.9
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.6
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.6
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.8e-117 425.6 277 84.1
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.8e-117 425.6 277 84.8
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.8e-117 425.6 277 84.1
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 85.2
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.9e-117 424.9 277 85.2
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 6.3e-117 424.5 277 83.8
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 84.5
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 84.1
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.4e-116 423.3 277 84.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.4e-116 423.3 277 84.5
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.4e-116 423.3 277 84.8
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.8e-116 422.9 277 84.5
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.4e-116 421.4 277 84.1
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.0e-116 421.0 277 83.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 9.2e-116 420.6 277 83.0
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 9.2e-116 420.6 277 84.1
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.2e-116 420.6 277 83.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.2e-115 420.2 277 83.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-115 420.2 277 83.8
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.0e-115 419.5 277 84.1
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 2.0e-115 419.5 277 83.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 2.0e-115 419.5 277 83.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.7e-115 419.1 277 83.4
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 3.5e-115 418.7 277 83.0
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.5e-115 418.7 277 83.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 4.5e-115 418.3 278 83.8
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.3e-114 416.8 277 81.6
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.3e-114 416.8 277 82.7
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.3e-114 416.8 277 81.9
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.7e-114 416.4 277 82.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.7e-114 416.4 275 82.9
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 2.3e-114 416.0 276 84.1
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.8e-114 415.2 276 83.7
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 5.0e-114 414.8 277 83.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.5e-113 413.3 277 82.7
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.5e-113 412.5 277 83.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.3e-113 412.1 277 81.9
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 4.3e-113 411.8 277 82.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 9.5e-113 410.6 277 81.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.6e-112 409.8 277 81.9
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.6e-112 409.8 261 86.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 2.1e-112 409.5 277 81.9
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.8e-112 409.1 274 82.1
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.7e-112 408.3 283 79.9
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.0e-111 407.1 274 81.8
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.0e-111 407.1 276 81.2
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.8e-111 406.4 277 81.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.3e-111 406.0 276 81.9
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.0e-110 402.9 301 76.1
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.4e-110 402.1 277 81.2
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 4.4e-110 401.7 321 74.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.3e-109 400.2 261 83.5
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.7e-109 399.8 276 81.9
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.7e-109 399.8 261 83.1
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.2e-109 399.4 277 77.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 2.9e-109 399.1 275 81.1
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 2.9e-109 399.1 275 81.1
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.8e-108 396.4 275 80.7
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 5.4e-108 394.8 276 81.5
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.6e-107 393.3 278 79.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 2.7e-107 392.5 279 80.3
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.7e-107 392.5 270 82.2
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 3.5e-107 392.1 278 78.8
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.0e-107 391.3 274 80.3
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.3e-106 390.2 277 78.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.5e-105 386.7 318 71.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.5e-105 386.0 275 77.8
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.3e-105 385.6 320 70.3
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 7.3e-105 384.4 277 78.3
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 7.3e-105 384.4 254 84.3
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 9.5e-105 384.0 263 81.4
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 2.8e-104 382.5 278 76.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 6.2e-104 381.3 254 81.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.1e-103 380.6 318 65.7
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.2e-102 377.1 278 76.6
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.2e-102 377.1 272 75.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 4.4e-102 375.2 299 67.9
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.2e-101 372.9 269 73.2
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 8.3e-101 370.9 271 76.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.1e-100 370.5 274 71.9
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.2e-99 367.1 281 75.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.6e-99 366.7 353 60.3
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.7e-99 365.9 274 74.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 6.0e-99 364.8 256 79.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.7e-98 363.2 260 78.8
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 5.8e-94 348.2 229 85.2
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.7e-93 345.5 332 65.1
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 8.3e-93 344.4 230 83.5
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 5.4e-92 341.7 222 86.9
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 8.6e-90 334.3 266 69.5
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.5e-89 333.6 222 84.2
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 7.3e-89 331.3 277 66.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.2e-88 330.5 276 63.0
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.2e-85 319.7 249 73.1
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.2e-85 319.7 249 73.1
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 4.9e-85 318.5 281 65.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-83 313.2 274 67.5
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.7e-83 312.8 283 63.3
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 6.0e-83 311.6 273 61.9
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-82 309.7 274 67.2
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.7e-82 307.8 314 62.7
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.5e-81 307.0 224 79.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.3e-66 256.5 186 78.5
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.9e-66 255.8 258 57.4
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.1e-65 254.2 290 51.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 9.0e-63 244.6 278 53.2
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 5.6e-57 225.3 155 75.5
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.1e-55 221.1 180 72.2
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 5.8e-54 215.3 138 81.2
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.0e-50 204.5 145 81.4
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.3e-50 203.4 129 80.6
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.1e-49 201.1 132 76.5
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.4e-49 198.4 300 46.7
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.7e-40 170.6 97 87.6
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 4.1e-39 166.0 90 90.0
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 5.3e-39 165.6 106 77.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 7.9e-35 151.8 84 90.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.8e-32 142.5 155 57.4
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 4.2e-28 129.4 80 80.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 9.4e-28 128.3 74 86.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 9.4e-28 128.3 74 86.5
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.6e-27 127.5 80 77.5
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 4.5e-22 109.4 263 34.6
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.5e-20 102.4 158 45.6
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-18 97.4 75 81.3
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 8.8e-18 95.1 158 41.8
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-17 94.0 123 49.6
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 2.6e-17 93.6 150 38.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.4e-17 92.8 157 40.1
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-16 91.3 75 73.3
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 3.7e-16 89.7 157 41.4
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.8e-16 89.4 65 67.7
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.1e-15 88.2 158 38.6
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 3.1e-15 86.7 76 65.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.3e-13 81.3 67 65.7
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.7e-13 80.9 50 74.0
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-12 78.2 157 34.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.4e-12 75.1 46 82.6
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 2.3e-10 70.5 43 76.7
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.5e-09 67.8 157 36.3
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.4e-09 66.6 233 32.6
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.4e-09 66.2 172 33.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-07 61.6 140 40.7
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 2.0e-06 57.4 47 63.8


User provided reference genes

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