Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.4e-200 701.4 354 100.0
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.3e-172 609.0 354 87.0
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.1e-153 547.0 363 77.1
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 4.7e-149 531.6 363 75.5
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 6.2e-149 531.2 365 74.5
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.8e-148 529.6 365 74.2
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.3e-148 529.3 365 74.5
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 4.0e-148 528.5 365 74.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 8.9e-148 527.3 365 75.3
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 4.4e-147 525.0 361 74.2
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 9.2e-145 517.3 359 72.7
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.2e-144 516.9 363 73.6
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 6.0e-144 514.6 369 72.6
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.7e-143 513.1 362 73.2
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 5.1e-143 511.5 352 75.0
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.2e-141 506.9 363 73.3
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.2e-141 506.9 361 73.1
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.6e-141 506.5 361 72.6
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 2.1e-141 506.1 356 70.8
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.8e-141 505.8 352 69.9
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 2.4e-140 502.7 361 70.9
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 8.9e-140 500.7 365 70.4
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 8.9e-140 500.7 363 72.7
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.4e-139 498.8 353 73.4
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 4.4e-139 498.4 366 69.7
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.8e-139 498.0 362 72.9
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.9e-139 497.3 362 72.9
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 9.9e-139 497.3 351 72.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 9.9e-139 497.3 358 71.5
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.7e-138 496.5 362 72.4
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.7e-138 496.5 363 70.0
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.9e-138 495.7 356 70.2
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.9e-138 495.7 364 71.2
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 2.9e-138 495.7 364 71.2
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.8e-138 495.4 362 72.7
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.4e-137 493.4 385 66.5
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 3.2e-137 492.3 356 69.1
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 9.2e-137 490.7 353 70.3
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.2e-136 490.3 364 69.5
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-136 490.0 359 70.8
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 7.8e-136 487.6 351 70.9
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.3e-135 486.1 351 67.8
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.3e-135 486.1 363 70.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.1e-135 485.0 372 68.3
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 6.6e-135 484.6 346 69.7
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 8.7e-135 484.2 328 74.7
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-134 483.4 382 65.4
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 4.3e-134 481.9 352 65.6
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 9.6e-134 480.7 363 70.0
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 1.1e-132 477.2 358 69.8
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.1e-132 477.2 357 69.5
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.1e-132 475.7 351 70.4
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 6.9e-132 474.6 362 68.8
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.0e-131 473.0 360 68.3
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 4.9e-130 468.4 328 73.2
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.9e-129 466.5 350 69.7
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 1.9e-129 466.5 367 67.3
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.2e-129 465.7 363 66.9
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 7.1e-129 464.5 363 66.7
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.2e-128 463.8 352 68.5
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.6e-128 463.4 359 66.6
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.3e-127 460.3 329 71.7
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 6.6e-127 458.0 323 73.4
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 6.6e-127 458.0 329 71.4
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 6.6e-127 458.0 329 72.0
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.6e-127 458.0 354 68.6
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.5e-126 456.8 422 58.8
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.9e-126 456.4 317 68.1
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 7.3e-126 454.5 353 67.4
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 2.1e-125 453.0 335 69.6
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.6e-125 452.2 354 66.1
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.6e-125 452.2 365 65.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 4.8e-125 451.8 352 67.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 4.8e-125 451.8 370 65.4
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 6.2e-125 451.4 356 68.0
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.4e-124 450.3 357 66.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.1e-124 449.1 356 65.2
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 5.3e-124 448.4 321 71.3
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 9.0e-124 447.6 345 67.5
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 9.0e-124 447.6 335 68.7
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 9.0e-124 447.6 327 72.2
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 9.9e-123 444.1 355 65.1
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 2.7e-120 436.0 356 64.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 3.0e-119 432.6 349 65.0
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.5e-118 429.5 353 64.9
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.6e-117 426.8 345 64.3
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.1e-117 426.4 353 64.9
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 3.7e-117 425.6 327 68.8
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.8e-117 425.2 431 55.0
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.8e-116 423.3 357 58.3
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 4.0e-116 422.2 353 62.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 9.9e-115 417.5 300 73.0
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 6.4e-114 414.8 352 62.5
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 4.2e-113 412.1 329 65.0
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.3e-113 411.0 276 70.7
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.6e-112 410.2 352 62.5
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 2.3e-111 406.4 353 61.2
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 7.4e-110 401.4 352 54.5
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.8e-109 399.4 353 61.2
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 8.2e-109 397.9 361 59.6
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 8.2e-109 397.9 352 59.4
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 8.2e-109 397.9 320 65.9
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.1e-108 397.5 350 61.1
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.4e-108 397.1 319 65.5
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.4e-108 397.1 362 59.9
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 2.4e-108 396.4 320 65.9
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 3.1e-108 396.0 349 59.3
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 5.3e-108 395.2 321 65.1
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-107 394.0 318 65.1
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 4.5e-107 392.1 319 64.3
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.0e-106 391.0 350 60.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.7e-106 390.2 338 61.5
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 9.3e-105 384.4 343 53.4
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-104 384.0 341 60.7
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.6e-104 383.6 338 60.9
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 3.5e-104 382.5 324 65.4
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.1e-102 377.5 318 62.3
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.4e-100 369.8 271 65.7
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.1e-100 369.0 344 61.0
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.2e-98 363.2 226 73.0
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.8e-98 362.5 291 67.0
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.5e-97 359.8 292 69.2
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 5.5e-97 358.6 413 49.4
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.7e-96 356.3 277 62.1
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 5.1e-95 352.1 342 55.0
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.1e-95 352.1 296 63.9
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 3.1e-92 342.8 352 53.1
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 4.1e-92 342.4 265 62.6
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.2e-91 340.9 339 56.3
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-91 340.1 329 55.0
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.0e-90 337.8 242 66.1
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.9e-90 336.3 360 55.8
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 9.4e-89 331.3 352 54.0
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 2.7e-88 329.7 333 48.6
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 3.6e-88 329.3 215 67.4
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.7e-87 325.1 324 56.5
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.4e-84 316.6 330 50.3
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 5.3e-84 315.5 321 51.4
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.5e-83 313.9 352 48.0
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 2.7e-80 303.1 323 54.8
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 6.1e-80 302.0 189 70.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.0e-79 301.2 323 55.1
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 8.8e-79 298.1 322 54.0
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 2.6e-78 296.6 320 54.7
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 4.4e-78 295.8 325 53.5
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 8.2e-77 291.6 330 52.1
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.1e-76 291.2 327 53.8
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 3.1e-76 289.7 323 53.6
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 7.7e-75 285.0 328 51.2
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.0e-74 284.6 321 52.0
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.7e-74 283.9 325 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 8.5e-74 281.6 316 49.4
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.5e-73 280.8 325 50.8
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 5.5e-73 278.9 327 51.1
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.7e-70 268.1 202 64.4
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 4.2e-65 252.7 222 50.5
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-62 244.6 351 43.6
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-59 234.6 353 44.2
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.2e-54 218.0 161 65.8
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 7.5e-54 215.3 367 39.2
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 2.8e-53 213.4 109 88.1
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.9e-50 203.4 110 82.7
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 5.2e-47 192.6 130 63.1
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.6e-41 172.6 93 81.7
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.2e-16 91.7 102 42.2
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.4e-12 78.2 38 81.6
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.9e-12 77.8 48 66.7
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 4.2e-12 76.6 71 63.4
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 2.1e-11 74.3 43 79.1
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 3.9e-10 70.1 44 72.7
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 1.1e-09 68.6 45 73.3
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 1.9e-09 67.8 42 76.2
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 4.3e-09 66.6 40 75.0
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 4.3e-09 66.6 40 75.0
FAN10G2408 Fragaria x ananassa HOM05D003920 ORTHO05D017698 8.1e-08 62.4 48 64.6
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 3.1e-07 60.5 30 90.0
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 6.9e-07 59.3 32 84.4
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 3.4e-06 57.0 50 58.0


User provided reference genes

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