Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.6e-118 428.7 212 100.0
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 2.9e-93 345.5 186 88.7
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 1.1e-92 343.6 186 88.2
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.1e-92 343.6 186 87.1
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.9e-92 342.8 186 87.1
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.9e-92 342.8 186 86.6
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 2.4e-92 342.4 197 84.3
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 5.4e-92 341.3 186 88.2
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.2e-91 340.1 186 86.6
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 2.1e-91 339.3 185 87.0
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 2.7e-91 339.0 186 84.9
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 6.0e-91 337.8 200 82.5
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 6.0e-91 337.8 186 86.0
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 6.0e-91 337.8 186 85.5
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 7.8e-91 337.4 186 86.6
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 7.8e-91 337.4 186 86.6
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 6.6e-90 334.3 195 81.0
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 6.6e-90 334.3 186 83.9
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.1e-89 333.6 186 84.9
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.5e-89 333.2 186 84.9
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 2.5e-89 332.4 186 84.9
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 3.3e-89 332.0 186 84.9
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 4.3e-89 331.6 186 85.5
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 4.3e-89 331.6 185 84.3
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 7.3e-89 330.9 186 83.9
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.3e-88 330.1 212 75.5
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.6e-88 329.7 186 83.3
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.6e-88 329.7 185 84.9
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 1.6e-88 329.7 186 82.8
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 1.6e-88 329.7 186 83.3
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.1e-88 329.3 185 83.8
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 2.8e-88 328.9 186 83.9
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 2.8e-88 328.9 186 83.9
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 3.6e-88 328.6 186 83.9
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 4.8e-88 328.2 186 82.8
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 6.2e-88 327.8 186 82.8
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 8.1e-88 327.4 186 83.9
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 8.1e-88 327.4 184 81.5
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 1.1e-87 327.0 186 84.4
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.4e-87 326.6 186 82.8
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.4e-87 326.6 186 83.3
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 6.9e-87 324.3 182 83.5
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 6.9e-87 324.3 186 81.7
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 6.9e-87 324.3 187 81.8
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 9.0e-87 323.9 186 81.7
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 1.2e-86 323.6 186 82.8
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.5e-86 323.2 187 80.7
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 2.6e-86 322.4 185 82.2
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 3.4e-86 322.0 186 81.7
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 3.4e-86 322.0 188 79.8
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 7.6e-86 320.9 186 82.3
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 9.9e-86 320.5 190 82.1
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 9.9e-86 320.5 186 80.6
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 1.3e-85 320.1 211 75.8
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.3e-85 320.1 196 78.1
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 1.3e-85 320.1 184 81.5
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 1.7e-85 319.7 186 80.6
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.7e-85 319.7 188 80.3
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.7e-85 319.7 184 81.5
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 2.2e-85 319.3 186 80.6
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 2.2e-85 319.3 185 81.1
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 3.8e-85 318.5 182 81.9
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 6.4e-85 317.8 183 81.4
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 6.4e-85 317.8 183 81.4
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 6.4e-85 317.8 181 81.8
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 8.4e-85 317.4 183 80.9
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.4e-84 316.6 184 81.5
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 1.4e-84 316.6 183 80.9
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.4e-84 316.6 173 83.8
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.9e-84 316.2 183 80.9
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.9e-84 316.2 183 80.9
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.9e-84 316.2 181 81.2
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.9e-84 316.2 184 80.4
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.4e-84 315.8 183 79.8
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.2e-84 315.1 186 79.0
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 7.1e-84 314.3 184 80.4
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 9.3e-84 313.9 184 79.3
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 9.3e-84 313.9 184 80.4
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.6e-83 313.2 183 79.2
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.6e-83 313.2 183 79.2
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.6e-83 313.2 183 79.2
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.6e-83 313.2 184 78.8
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.6e-83 313.2 184 78.8
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 1.6e-83 313.2 211 72.0
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.6e-83 313.2 182 80.2
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.6e-83 313.2 182 80.2
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 2.7e-83 312.4 188 77.7
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 3.5e-83 312.0 183 78.7
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 4.6e-83 311.6 187 80.7
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 6.0e-83 311.2 183 78.7
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 6.0e-83 311.2 185 77.8
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 7.9e-83 310.8 183 78.7
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 7.9e-83 310.8 183 78.1
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.9e-83 310.8 184 77.7
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.0e-82 310.5 183 78.7
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.0e-82 310.5 172 85.5
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 1.0e-82 310.5 186 76.3
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.7e-82 309.7 184 77.7
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.3e-82 309.3 184 78.8
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 2.3e-82 309.3 187 80.2
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 3.0e-82 308.9 183 79.8
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 8.7e-82 307.4 184 79.3
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 8.7e-82 307.4 183 77.6
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 8.7e-82 307.4 183 77.6
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.9e-81 306.2 186 78.0
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 2.8e-80 302.4 186 77.4
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 4.8e-80 301.6 200 73.0
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 4.8e-80 301.6 183 81.4
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.4e-78 295.4 185 75.7
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 9.9e-78 293.9 186 76.3
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 3.8e-77 292.0 186 74.7
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 6.4e-77 291.2 186 74.2
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.6e-75 286.6 186 73.1
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 2.1e-75 286.2 186 73.1
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 2.1e-75 286.2 184 72.8
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 6.0e-75 284.6 186 72.0
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 1.3e-74 283.5 186 72.0
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 2.3e-74 282.7 186 72.0
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.1e-73 280.4 186 70.4
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 1.5e-73 280.0 186 71.0
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 4.8e-64 248.4 183 56.8
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.5e-62 243.4 172 69.8
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 5.8e-62 241.5 181 59.7
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.8e-61 238.8 187 59.4
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.7e-57 224.9 177 55.9
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 4.8e-56 221.9 180 56.1
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 4.1e-55 218.8 183 54.1
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 3.3e-49 199.1 151 61.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.2e-44 182.6 180 52.2
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.6e-35 153.7 194 44.8
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 6.7e-34 148.3 89 80.9
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.1e-28 131.0 88 69.3
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 7.0e-23 111.7 157 35.7
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 4.2e-20 102.4 54 85.2
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 3.4e-09 66.2 88 37.5


User provided reference genes

Program Settings