Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15377 Nelumbo nucifera HOM05D003293 ORTHO05D005060 2.6e-32 141.4 66 100.0
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 3.1e-14 81.3 44 93.2
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 4.1e-14 80.9 44 90.9
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 5.4e-14 80.5 44 88.6
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 7.0e-14 80.1 44 90.9
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.2e-13 79.3 44 88.6
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.6e-13 79.0 44 88.6
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.6e-13 79.0 44 90.9
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 2.0e-13 78.6 44 88.6
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 2.0e-13 78.6 44 88.6
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.0e-13 78.6 44 86.4
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 88.6
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 88.6
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 86.4
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 86.4
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 86.4
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 86.4
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 86.4
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 86.4
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 2.7e-13 78.2 44 86.4
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 3.5e-13 77.8 44 88.6
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 3.5e-13 77.8 44 88.6
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 4.5e-13 77.4 44 86.4
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 4.5e-13 77.4 44 88.6
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 4.5e-13 77.4 44 88.6
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 5.9e-13 77.0 44 86.4
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 5.9e-13 77.0 44 86.4
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 84.1
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 86.4
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 84.1
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 86.4
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 88.6
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 84.1
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 84.1
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 7.8e-13 76.6 44 84.1
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 1.0e-12 76.3 44 84.1
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 1.0e-12 76.3 44 86.4
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.0e-12 76.3 44 88.6
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 1.0e-12 76.3 44 88.6
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 1.0e-12 76.3 44 81.8
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.0e-12 76.3 44 88.6
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.0e-12 76.3 44 88.6
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 86.4
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 86.4
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 84.1
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 84.1
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 84.1
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 84.1
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 86.4
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 84.1
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 84.1
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 86.4
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 1.3e-12 75.9 44 84.1
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 86.4
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 86.4
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 86.4
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 86.4
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 81.8
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 81.8
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 84.1
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.7e-12 75.5 44 86.4
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 81.8
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 81.8
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 81.8
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 2.3e-12 75.1 44 84.1
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 2.9e-12 74.7 44 84.1
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 2.9e-12 74.7 44 86.4
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 2.9e-12 74.7 44 81.8
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 2.9e-12 74.7 44 84.1
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.9e-12 74.3 44 79.5
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 3.9e-12 74.3 44 81.8
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 3.9e-12 74.3 44 81.8
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 3.9e-12 74.3 44 81.8
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 5.0e-12 73.9 44 81.8
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 5.0e-12 73.9 44 86.4
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 5.0e-12 73.9 44 86.4
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 5.0e-12 73.9 44 84.1
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 5.0e-12 73.9 44 81.8
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 5.0e-12 73.9 44 84.1
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 5.0e-12 73.9 44 86.4
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 6.6e-12 73.6 44 84.1
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 6.6e-12 73.6 44 81.8
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 8.6e-12 73.2 44 81.8
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 8.6e-12 73.2 44 81.8
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 8.6e-12 73.2 44 81.8
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 8.6e-12 73.2 44 81.8
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 8.6e-12 73.2 44 84.1
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 81.8
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 77.3
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 77.3
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 77.3
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 77.3
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 81.8
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 79.5
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.1e-11 72.8 44 84.1
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 1.5e-11 72.4 44 84.1
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.5e-11 72.4 44 79.5
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 1.5e-11 72.4 44 79.5
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 1.5e-11 72.4 44 79.5
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 2.5e-11 71.6 44 77.3
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 2.5e-11 71.6 79 51.9
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 2.5e-11 71.6 44 79.5
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 3.3e-11 71.2 44 81.8
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 3.3e-11 71.2 44 79.5
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 3.3e-11 71.2 44 79.5
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 3.3e-11 71.2 44 79.5
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 4.3e-11 70.9 44 77.3
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 4.3e-11 70.9 44 77.3
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 5.6e-11 70.5 44 77.3
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 9.5e-11 69.7 44 81.8
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.2e-10 69.3 44 77.3
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 1.2e-10 69.3 44 77.3
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.6e-10 68.9 44 79.5
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 1.6e-10 68.9 44 79.5
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 1.6e-10 68.9 44 79.5
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.6e-10 68.9 44 79.5
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 2.1e-10 68.6 44 77.3
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.1e-10 68.6 44 77.3
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.1e-10 68.6 44 77.3
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.1e-10 68.6 44 77.3
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 2.8e-10 68.2 44 75.0
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 2.8e-10 68.2 44 77.3
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 3.6e-10 67.8 44 79.5
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 3.6e-10 67.8 54 64.8
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 6.1e-10 67.0 44 75.0
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 6.1e-10 67.0 44 70.5
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 6.1e-10 67.0 44 70.5
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 8.0e-10 66.6 44 75.0
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.0e-09 66.2 44 75.0
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.0e-09 66.2 44 70.5
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 1.0e-09 66.2 44 70.5
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.8e-09 65.5 44 77.3
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 5.2e-09 63.9 44 72.7
arahy.Tifrunner.gnm1.ann1.K3F60Q Arachis hypogaea HOM05D003293 ORTHO05D005060 5.2e-09 63.9 40 77.5
RcHm_v2.0_Chr2g0155871 Rosa chinensis HOM05D003293 ORTHO05D013446 6.8e-09 63.5 44 70.5
RcHm_v2.0_Chr3g0468611 Rosa chinensis HOM05D003293 ORTHO05D013446 6.8e-09 63.5 44 70.5
RcHm_v2.0_Chr4g0401281 Rosa chinensis HOM05D003293 ORTHO05D013446 6.8e-09 63.5 44 70.5
RcHm_v2.0_Chr7g0231801 Rosa chinensis HOM05D003293 ORTHO05D013446 6.8e-09 63.5 44 70.5
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 1.2e-08 62.8 44 68.2
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 1.2e-08 62.8 44 72.7
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.5e-08 62.4 44 70.5
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 2.0e-08 62.0 44 68.2
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 5.8e-08 60.5 44 61.4
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 5.8e-08 60.5 44 68.2
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 7.5e-08 60.1 44 63.6
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.3e-07 59.3 37 75.7
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 3.7e-07 57.8 44 65.9
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 3.7e-07 57.8 37 75.7
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 3.7e-07 57.8 79 44.3
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 6.4e-07 57.0 44 63.6
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 4.1e-06 54.3 44 59.1


User provided reference genes

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