Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 0.0e+00 1079.3 555 100.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 9.1e-248 860.1 536 82.1
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.8e-235 817.4 536 78.2
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.8e-220 768.8 536 72.8
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 5.9e-215 751.1 531 72.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.0e-214 750.4 539 72.4
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.7e-214 749.6 543 70.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.0e-214 748.0 536 71.5
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 6.6e-214 747.7 535 72.1
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.5e-213 746.5 537 71.1
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 3.6e-212 741.9 534 70.4
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 6.2e-212 741.1 536 69.6
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.4e-211 740.0 543 68.0
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 5.4e-208 728.0 540 68.7
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 2.7e-207 725.7 536 68.3
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.5e-207 725.3 536 67.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 5.0e-206 721.5 536 66.6
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.5e-205 719.2 536 67.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 6.2e-204 714.5 536 67.4
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 8.1e-204 714.1 537 67.8
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.8e-203 713.0 537 67.8
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 8.9e-203 710.7 536 68.1
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-202 709.1 539 65.5
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.3e-201 706.8 536 67.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 4.9e-201 704.9 534 66.5
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.1e-200 701.8 536 66.2
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.7e-199 699.1 537 68.2
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.8e-199 697.6 527 67.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 8.6e-198 694.1 537 66.9
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.5e-197 693.3 578 63.1
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.3e-197 692.2 534 65.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 5.6e-197 691.4 540 64.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 7.3e-197 691.0 537 66.5
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 9.5e-197 690.6 540 65.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.2e-196 690.3 540 65.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.6e-196 689.9 537 66.9
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-196 689.1 527 66.2
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.8e-196 689.1 536 64.4
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 5.2e-195 684.9 536 64.2
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.4e-194 682.2 536 64.4
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 3.4e-194 682.2 540 63.9
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-193 679.9 536 63.6
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.1e-192 677.2 556 62.6
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-192 676.0 536 63.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 4.1e-192 675.2 537 64.4
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-191 672.9 536 62.9
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.1e-191 672.9 537 64.1
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 4.6e-191 671.8 536 63.4
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 4.6e-191 671.8 573 61.3
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.3e-190 670.2 537 63.7
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 5.1e-190 668.3 545 63.1
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 8.7e-190 667.5 533 64.2
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 4.3e-189 665.2 536 61.4
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.2e-188 663.7 536 62.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.8e-188 662.5 536 62.5
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.6e-188 662.1 537 64.2
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.1e-187 660.6 530 63.4
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.2e-186 657.1 536 62.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.6e-186 656.0 536 62.9
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 2.6e-186 656.0 539 61.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 3.4e-186 655.6 536 62.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.4e-186 655.2 536 62.9
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.8e-186 654.8 546 61.4
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 5.8e-186 654.8 537 62.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.8e-186 654.8 536 62.9
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 7.6e-186 654.4 536 62.5
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.7e-185 653.3 542 60.7
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-185 652.1 536 62.3
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 8.4e-185 651.0 536 61.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 8.4e-185 651.0 536 62.1
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 9.3e-184 647.5 538 61.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 6.0e-183 644.8 537 61.1
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.0e-182 644.0 527 63.2
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.3e-182 643.7 537 61.3
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-182 643.3 538 60.4
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-181 640.2 538 60.2
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.5e-181 640.2 538 60.2
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 4.3e-181 638.6 509 64.4
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 5.6e-181 638.3 537 60.1
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 5.6e-181 638.3 537 60.5
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 7.3e-181 637.9 532 60.5
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 9.6e-181 637.5 544 59.4
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-179 634.0 534 60.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.1e-179 634.0 538 59.7
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.8e-179 633.3 585 57.9
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 4.0e-179 632.1 537 61.8
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.3e-179 631.7 539 61.4
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 3.4e-178 629.0 534 59.7
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 4.5e-178 628.6 566 57.4
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.1e-176 624.0 550 59.5
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.4e-176 622.9 536 60.6
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.2e-176 622.5 536 60.8
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 4.2e-176 622.1 537 59.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.5e-175 619.0 527 60.3
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 6.0e-175 618.2 526 61.4
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.0e-174 617.5 507 62.5
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.1e-173 614.0 528 61.2
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.0e-171 605.5 541 57.3
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 6.9e-171 604.7 536 58.2
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 3.2e-168 595.9 536 57.6
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.7e-167 592.8 456 67.1
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 6.0e-167 591.7 539 56.0
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 9.6e-165 584.3 512 61.1
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 4.8e-164 582.0 537 56.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.5e-160 568.5 401 72.1
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.5e-159 565.8 537 55.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 8.2e-156 554.7 456 64.3
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.6e-154 549.7 538 52.6
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 2.7e-151 539.7 537 52.7
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 6.9e-147 525.0 536 53.5
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.1e-144 517.7 433 63.0
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.3e-132 477.6 428 59.1
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.0e-126 458.0 537 47.3
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.4e-123 446.8 540 43.9
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-122 444.5 443 54.9
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.4e-117 426.0 537 43.9
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.3e-116 424.5 538 43.3
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.7e-116 424.1 537 43.8
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 3.8e-113 412.9 537 40.4
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 2.5e-104 383.6 295 68.1
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.8e-87 327.0 378 49.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.7e-81 307.8 240 65.4
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 9.2e-75 285.4 246 60.2
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 9.2e-75 285.4 429 41.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.9e-67 261.2 235 56.2
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.1e-63 247.7 384 40.9
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 2.9e-60 237.3 378 41.0
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.2e-50 205.3 170 58.8
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-50 204.5 251 47.8
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.5e-48 198.4 335 37.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 9.6e-48 195.7 306 42.8
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 3.7e-47 193.7 306 40.8
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-41 174.1 133 66.2
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.5e-40 171.0 138 63.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.9e-36 157.5 97 83.5
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.9e-35 154.8 249 39.8
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.1e-34 151.4 217 45.6
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 6.3e-31 139.8 99 66.7
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 3.1e-30 137.5 105 61.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.7e-26 124.4 409 26.7
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.2e-23 114.8 96 61.5
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.8e-23 113.6 117 51.3
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 4.8e-23 113.6 83 72.3
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.5e-20 103.2 132 47.7
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.2e-19 100.5 134 46.3
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-18 99.0 132 45.5
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.7e-18 97.8 73 67.1
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 5.2e-17 93.6 141 44.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 2.8e-15 87.8 77 57.1
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 2.8e-15 87.8 85 54.1
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-14 85.9 67 64.2
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.3e-14 83.6 69 59.4
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-13 82.0 61 62.3
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 9.4e-11 72.8 78 48.7
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-10 72.4 59 64.4
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.3e-09 68.2 73 47.9
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 4.0e-09 67.4 52 59.6
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-07 62.4 62 46.8
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.3e-07 62.4 122 30.3
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.8e-06 58.5 54 50.0
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 4.1e-06 57.4 62 41.9
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 5.3e-06 57.0 67 43.3
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 5.3e-06 57.0 65 43.1
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 5.3e-06 57.0 65 43.1


User provided reference genes

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