Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.3e-142 508.8 249 100.0
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-100 370.2 222 80.2
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.2e-100 369.4 222 80.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.2e-93 347.1 222 76.1
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.7e-92 342.0 222 75.2
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.1e-91 340.5 222 76.1
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.9e-91 339.7 222 75.2
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 4.1e-91 338.6 222 71.6
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.4e-91 338.2 222 75.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 2.0e-90 336.3 222 75.7
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.7e-90 335.9 222 73.9
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 6.0e-90 334.7 222 73.0
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.9e-89 332.0 222 73.9
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.9e-88 329.7 222 74.3
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.3e-88 328.6 225 72.9
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 9.5e-88 327.4 222 73.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 9.5e-88 327.4 224 71.0
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.5e-88 327.4 228 71.1
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.8e-86 323.2 224 73.7
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.6e-85 319.3 222 73.4
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 3.4e-85 318.9 219 70.3
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 5.8e-85 318.2 223 70.4
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.3e-84 317.0 222 68.9
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.9e-84 315.8 224 67.4
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.9e-84 315.8 224 67.4
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 8.3e-84 314.3 223 72.2
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-83 313.9 224 67.0
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 7.1e-83 311.2 223 70.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.2e-82 310.5 222 67.6
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 2.1e-82 309.7 226 71.2
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.1e-82 309.7 223 67.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.7e-82 309.3 225 68.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.5e-82 308.9 223 67.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 3.5e-82 308.9 220 69.5
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.8e-82 307.8 222 67.1
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.0e-81 307.4 223 67.3
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.3e-81 307.0 222 70.3
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.7e-81 306.6 223 66.8
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.9e-81 305.4 223 66.8
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 3.9e-81 305.4 225 68.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 7.3e-80 301.2 222 66.7
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-79 300.4 220 68.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.2e-79 300.4 225 66.2
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.6e-79 300.1 223 65.5
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.1e-79 299.7 229 69.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.1e-79 299.7 228 65.8
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.1e-79 299.7 225 65.8
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.8e-79 299.3 221 68.8
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.8e-79 299.3 222 68.9
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 8.1e-79 297.7 223 66.4
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.4e-78 297.0 226 64.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.4e-78 296.2 221 68.8
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 8.9e-78 294.3 223 67.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.0e-77 293.1 223 65.9
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.6e-77 292.7 239 63.2
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.4e-77 292.4 223 67.3
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 4.4e-77 292.0 226 66.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 4.4e-77 292.0 222 66.7
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.2e-76 289.7 226 65.9
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.8e-76 288.9 226 65.9
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.4e-75 286.2 223 66.4
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.2e-75 285.8 231 61.9
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 7.1e-75 284.6 220 62.7
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.7e-74 282.7 228 64.5
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 2.3e-73 279.6 224 67.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.0e-73 279.3 222 67.1
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.5e-72 276.9 226 60.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.5e-72 276.9 223 62.8
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 2.5e-72 276.2 224 61.2
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.3e-72 275.4 222 62.6
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 5.6e-72 275.0 222 64.9
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 7.3e-72 274.6 223 65.5
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 9.6e-72 274.2 224 60.7
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-71 273.9 222 62.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.6e-71 273.5 222 62.2
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.6e-71 273.5 222 66.7
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.8e-71 272.7 225 62.2
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.8e-71 272.7 222 62.6
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.1e-71 271.2 219 63.5
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.1e-70 270.8 219 63.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.1e-70 270.8 226 65.5
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.4e-70 270.4 229 60.7
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.8e-70 270.0 222 63.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.1e-70 269.2 223 61.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.0e-70 268.9 224 62.5
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.0e-70 268.9 225 64.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 5.2e-70 268.5 225 61.8
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 5.2e-70 268.5 222 62.2
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.9e-70 268.1 223 60.5
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.9e-70 268.1 222 62.2
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.4e-69 265.8 220 61.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.8e-69 265.0 222 60.4
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.8e-69 265.0 225 61.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.8e-69 265.0 225 60.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 9.9e-69 264.2 222 62.6
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.9e-69 264.2 224 61.2
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 9.9e-69 264.2 161 75.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.7e-68 263.5 221 62.0
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.7e-68 263.5 217 62.7
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.7e-68 263.5 190 70.5
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.2e-68 263.1 223 60.5
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.7e-66 256.1 228 64.0
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.0e-65 254.2 219 61.6
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.9e-65 252.3 212 57.5
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 6.6e-65 251.5 222 56.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 7.3e-64 248.1 222 60.8
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 7.3e-64 248.1 222 60.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.8e-63 246.1 223 57.0
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.8e-63 246.1 220 55.5
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 3.6e-63 245.7 146 77.4
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.4e-62 243.8 220 56.4
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.4e-62 243.8 220 54.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.8e-62 243.4 254 56.3
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.0e-62 241.1 220 54.5
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-61 240.7 223 55.6
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.2e-61 240.7 224 55.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.5e-61 240.4 223 55.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.5e-61 240.4 226 54.0
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.0e-61 240.0 223 55.2
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.0e-61 240.0 222 59.5
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.6e-61 239.6 219 59.4
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 3.4e-61 239.2 224 55.8
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.4e-61 239.2 223 55.2
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.4e-61 239.2 223 55.2
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.8e-61 238.4 220 53.6
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 7.6e-61 238.0 221 53.8
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.3e-60 237.3 187 63.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.4e-59 233.8 223 55.2
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.2e-59 232.6 222 53.6
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.2e-59 232.3 146 75.3
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 5.4e-59 231.9 223 54.7
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.2e-58 230.7 222 52.7
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.6e-58 230.3 237 51.9
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-58 229.2 223 55.2
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.8e-57 226.9 229 54.1
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.1e-56 224.2 223 55.2
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.5e-56 223.8 206 55.8
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.9e-56 223.4 234 52.1
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.5e-56 223.0 223 51.6
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 4.3e-56 222.2 236 51.7
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 9.6e-56 221.1 232 54.3
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.1e-55 219.9 203 53.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 4.8e-55 218.8 245 49.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 6.2e-55 218.4 149 69.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.2e-53 214.2 178 59.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.6e-53 213.0 169 60.4
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 5.8e-53 211.8 203 51.7
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 9.9e-53 211.1 206 55.3
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.3e-52 210.7 222 50.9
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.9e-52 209.5 205 50.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.9e-51 206.8 139 68.3
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.6e-50 203.8 241 50.6
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.1e-50 203.4 153 60.1
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 3.5e-50 202.6 179 57.5
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.3e-49 200.7 161 60.2
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.8e-49 200.3 223 49.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.3e-48 195.7 176 55.7
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-47 194.1 225 51.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.1e-47 193.4 165 63.6
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 4.0e-46 189.1 165 55.2
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.4e-45 186.0 274 45.3
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.9e-43 180.3 123 68.3
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 3.2e-43 179.5 217 47.5
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.2e-43 179.1 231 43.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.1e-42 176.8 225 48.0
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.5e-42 176.0 158 53.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-40 171.0 143 59.4
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.4e-38 164.1 196 43.4
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.5e-37 160.6 109 65.1
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 5.0e-36 155.6 218 44.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-33 147.9 234 41.9
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.0e-33 147.9 234 41.9
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.9e-32 143.7 77 85.7
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.3e-31 138.7 88 72.7
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 9.1e-30 134.8 223 39.5
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.5e-20 102.1 115 49.6
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 8.5e-20 101.7 58 74.1
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 2.6e-16 90.1 49 75.5
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.8e-15 85.9 54 70.4
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 7.5e-08 62.0 138 37.7


User provided reference genes

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