Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.7e-205 719.2 369 100.0
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.2e-171 606.7 364 84.3
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.1e-160 569.3 343 82.8
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 4.2e-156 555.1 367 79.3
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.4e-156 554.7 342 80.7
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.2e-155 553.5 343 80.5
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.0e-154 550.4 334 84.1
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.5e-153 546.6 335 82.1
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 9.6e-153 543.9 371 75.7
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 1.6e-152 543.1 363 76.9
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 4.8e-152 541.6 351 79.8
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 5.3e-151 538.1 338 80.8
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 6.9e-151 537.7 345 80.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 1.2e-150 537.0 371 73.9
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.2e-150 537.0 364 77.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.5e-150 536.6 365 75.3
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.5e-150 536.6 348 80.5
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.6e-150 535.8 354 78.2
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 2.6e-150 535.8 354 78.2
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 7.6e-150 534.3 354 78.0
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 3.8e-149 531.9 352 77.3
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.1e-148 530.4 366 74.3
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.1e-148 530.4 371 74.1
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 2.4e-148 529.3 366 74.3
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.2e-147 526.9 369 74.3
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 1.2e-147 526.9 361 72.9
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 6.0e-147 524.6 370 73.5
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 7.9e-147 524.2 362 74.3
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 7.9e-147 524.2 342 76.6
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.0e-146 523.9 339 78.5
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.3e-146 523.5 374 73.8
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.8e-146 523.1 314 81.2
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 3.0e-146 522.3 306 85.3
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 3.9e-146 521.9 352 76.7
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 6.7e-146 521.2 359 74.4
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 8.7e-146 520.8 337 78.3
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 1.1e-145 520.4 365 71.8
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.5e-145 520.0 375 73.3
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.9e-145 519.6 338 77.2
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.9e-145 519.6 330 79.7
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.5e-145 519.2 375 72.5
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.3e-145 518.8 389 71.0
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 5.6e-145 518.1 365 75.9
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.6e-145 518.1 389 71.0
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 5.6e-145 518.1 343 76.1
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.6e-144 516.5 337 78.0
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 2.1e-144 516.2 357 73.7
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 2.8e-144 515.8 335 78.8
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.7e-144 515.4 362 72.4
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 4.8e-144 515.0 361 72.0
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 8.1e-144 514.2 339 77.0
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 8.1e-144 514.2 368 72.6
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.1e-144 514.2 369 73.7
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 1.1e-143 513.8 345 73.9
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 4.0e-143 511.9 373 72.1
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 5.3e-143 511.5 363 72.7
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.3e-143 511.5 342 75.1
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 6.9e-143 511.1 324 78.4
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 9.0e-143 510.8 353 75.9
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.0e-143 510.8 376 70.5
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.5e-142 510.0 331 78.5
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.5e-142 510.0 361 72.6
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 4.5e-142 508.4 361 72.3
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 4.5e-142 508.4 361 71.7
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.8e-142 508.1 358 72.3
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 7.6e-142 507.7 332 75.6
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.3e-141 506.9 363 72.2
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 1.3e-141 506.9 368 72.3
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 8.4e-141 504.2 344 74.4
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.4e-140 503.4 333 75.7
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 4.2e-140 501.9 322 77.0
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 4.2e-140 501.9 358 72.1
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 7.1e-140 501.1 346 72.8
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 7.1e-140 501.1 361 73.1
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.6e-139 500.0 367 69.2
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 1.6e-139 500.0 359 73.0
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 2.1e-139 499.6 335 74.9
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.9e-138 495.4 362 70.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 3.9e-138 495.4 321 76.6
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 8.7e-138 494.2 310 79.0
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.1e-137 493.8 359 71.3
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 9.6e-137 490.7 362 70.2
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 9.6e-137 490.7 345 72.5
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.3e-136 490.3 362 68.0
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.8e-136 489.2 362 70.2
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.8e-135 486.5 284 86.6
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.5e-134 483.4 335 71.6
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 5.8e-134 481.5 327 74.6
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.9e-133 479.2 344 73.3
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 6.5e-133 478.0 335 74.9
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 8.4e-133 477.6 358 70.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.4e-132 476.9 312 77.2
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 2.5e-132 476.1 351 70.9
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 3.2e-132 475.7 349 70.8
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 5.5e-132 474.9 369 65.9
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 7.1e-132 474.6 351 70.9
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.7e-131 472.6 467 58.5
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 4.6e-131 471.9 361 67.9
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 4.3e-129 465.3 353 66.9
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.8e-127 459.9 334 71.0
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 5.3e-127 458.4 340 69.7
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 5.3e-127 458.4 368 67.4
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 6.9e-127 458.0 299 75.3
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.9e-127 458.0 350 69.4
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.6e-126 456.1 309 74.8
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 5.9e-126 454.9 348 68.7
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 5.9e-126 454.9 351 68.4
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 5.9e-126 454.9 351 68.4
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.7e-125 453.4 328 70.1
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 3.8e-125 452.2 348 68.1
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 5.0e-125 451.8 341 69.5
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.1e-124 450.7 333 70.0
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.9e-124 449.9 351 67.8
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 1.9e-124 449.9 351 67.5
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.9e-124 449.9 349 68.2
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.2e-124 449.1 351 68.1
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 5.5e-124 448.4 362 64.6
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 5.5e-124 448.4 329 67.2
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 9.4e-124 447.6 351 67.2
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 6.1e-123 444.9 331 70.4
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 5.1e-122 441.8 349 67.9
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 8.8e-122 441.0 322 66.5
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 3.7e-120 435.6 349 66.2
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 3.7e-120 435.6 349 66.2
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 6.3e-120 434.9 380 62.6
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.8e-119 433.3 349 65.6
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 5.3e-119 431.8 353 62.9
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 6.9e-119 431.4 330 68.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 6.9e-119 431.4 349 65.6
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.7e-117 426.8 282 77.0
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.8e-117 425.6 352 65.1
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.8e-111 406.8 329 62.9
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 8.0e-107 391.3 350 61.4
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 2.2e-104 383.3 273 70.7
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 6.1e-99 365.2 281 69.8
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 8.0e-99 364.8 332 60.5
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 8.0e-99 364.8 282 67.4
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 5.9e-94 348.6 324 55.9
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 2.2e-93 346.7 261 67.0
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.1e-92 344.4 231 74.9
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 7.2e-92 341.7 310 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 1.8e-87 327.0 316 55.4
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.8e-85 319.3 271 57.6
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 6.6e-85 318.5 327 52.6
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 9.5e-84 314.7 209 76.6
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.0e-82 311.2 229 72.5
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 2.6e-81 306.6 214 72.4
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 2.6e-81 306.6 201 76.6
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.8e-79 300.4 228 68.9
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 7.0e-79 298.5 215 69.8
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 2.3e-74 283.5 281 54.8
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 6.6e-69 265.4 294 48.3
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.8e-57 225.7 174 70.1
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 6.4e-56 222.2 136 83.1
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 1.1e-50 204.9 129 79.1
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 5.4e-47 192.6 132 72.7
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.1e-45 186.0 133 68.4
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 4.6e-38 162.9 90 85.6
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.8e-35 153.7 108 73.1
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.4e-26 124.8 92 64.1
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 2.9e-24 117.1 268 29.9
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 4.1e-18 96.7 347 26.8
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 4.6e-06 56.6 38 73.7


User provided reference genes

Program Settings