Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 8.7e-111 403.7 207 100.0
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.2e-66 256.1 211 69.2
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.3e-58 230.3 207 62.3
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.7e-56 221.9 194 65.5
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.2e-53 213.0 214 61.2
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.4e-52 210.3 198 64.6
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.8e-52 209.9 188 64.4
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 5.4e-52 208.4 178 67.4
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.7e-51 206.1 183 65.0
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 3.5e-51 205.7 212 59.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.9e-50 202.6 208 60.6
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 5.0e-50 201.8 193 60.6
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.6e-50 201.1 201 58.7
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.5e-49 200.3 182 64.8
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.5e-49 199.5 190 63.7
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.2e-49 198.7 189 62.4
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 2.8e-48 196.1 190 63.2
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 3.6e-48 195.7 214 57.9
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 4.7e-48 195.3 192 63.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.2e-47 191.8 189 61.9
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 3.4e-46 189.1 177 62.1
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 4.9e-45 185.3 171 65.5
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.8e-44 183.3 188 59.6
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 7.0e-44 181.4 203 56.7
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.6e-43 180.3 194 58.2
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.7e-43 179.5 242 48.8
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 5.9e-43 178.3 185 58.9
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 5.9e-43 178.3 179 57.5
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.3e-42 177.2 173 61.3
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.7e-42 176.8 193 57.5
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 8.6e-42 174.5 194 57.2
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 8.6e-42 174.5 189 54.0
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.6e-41 171.8 190 56.3
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 7.3e-41 171.4 212 53.3
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 9.5e-41 171.0 197 57.4
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.8e-40 169.5 210 53.3
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.8e-40 169.5 197 54.8
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.7e-40 168.7 197 54.3
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.0e-39 167.5 180 59.4
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.4e-39 167.2 195 54.4
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.4e-39 167.2 197 54.3
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.4e-39 167.2 195 54.4
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.8e-39 166.8 192 52.1
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 4.0e-39 165.6 185 56.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.5e-38 163.7 195 54.4
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.0e-38 163.3 180 58.9
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.6e-38 162.9 193 55.4
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.4e-38 162.5 207 54.1
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 4.4e-38 162.2 152 63.2
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.5e-38 161.4 190 55.8
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.9e-37 159.5 193 53.9
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 2.9e-37 159.5 178 56.7
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.7e-37 159.1 194 53.6
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.7e-37 159.1 183 55.7
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 6.4e-37 158.3 197 55.3
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.1e-36 157.5 200 54.5
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 2.4e-36 156.4 171 57.3
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 3.2e-36 156.0 174 57.5
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 3.2e-36 156.0 194 53.6
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 7.0e-36 154.8 194 56.7
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 7.0e-36 154.8 193 53.9
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.0e-36 154.8 212 49.1
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.6e-35 153.7 183 57.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.6e-35 153.7 182 56.6
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 4.6e-35 152.1 206 48.1
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.8e-35 151.4 177 57.6
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.0e-34 151.0 194 51.0
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.0e-34 151.0 218 50.0
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.7e-34 150.2 196 50.0
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.7e-34 150.2 203 53.2
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.7e-34 150.2 183 54.1
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.0e-34 149.4 205 51.2
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.9e-34 149.1 207 52.7
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 3.9e-34 149.1 207 52.7
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.9e-34 149.1 192 50.5
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.0e-34 148.7 202 49.5
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.0e-34 148.7 178 56.2
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.1e-33 147.5 229 48.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.5e-33 147.1 198 49.5
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 7.3e-33 144.8 206 51.5
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.2e-32 144.1 189 49.2
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.6e-32 143.7 205 50.2
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 3.6e-32 142.5 191 47.1
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 3.6e-32 142.5 191 47.1
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 4.7e-32 142.1 144 59.0
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 4.7e-32 142.1 145 58.6
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 6.2e-32 141.7 182 50.0
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.4e-31 140.6 210 47.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.8e-31 140.2 173 53.8
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 4.0e-31 139.0 212 44.3
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.0e-31 139.0 188 49.5
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 4.0e-31 139.0 188 46.8
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 5.2e-31 138.7 168 54.2
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 5.2e-31 138.7 201 44.3
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.0e-30 136.7 187 49.7
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.0e-30 136.7 178 53.4
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 2.6e-30 136.3 195 49.7
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.4e-30 136.0 140 60.7
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 4.4e-30 135.6 201 51.2
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 5.8e-30 135.2 222 45.0
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 5.8e-30 135.2 181 50.8
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 5.8e-30 135.2 186 50.0
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 9.8e-30 134.4 193 48.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.3e-29 134.0 197 46.7
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 3.7e-29 132.5 182 51.6
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 4.9e-29 132.1 172 53.5
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.1e-28 131.0 206 46.6
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 2.4e-28 129.8 182 47.3
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.4e-28 129.8 182 47.3
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.4e-28 129.8 184 46.2
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.4e-28 129.8 194 46.9
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.2e-28 129.4 197 46.2
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.4e-28 128.6 178 51.1
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 9.2e-28 127.9 218 45.0
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.6e-27 127.1 152 53.9
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.6e-27 127.1 196 45.9
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.1e-27 126.7 171 49.7
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 2.7e-27 126.3 183 47.5
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 4.6e-27 125.6 199 46.7
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.0e-26 124.4 221 44.8
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.3e-26 124.0 205 44.4
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.7e-26 123.6 186 47.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 3.9e-26 122.5 219 42.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.5e-25 120.6 153 51.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.9e-25 120.2 182 47.3
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.5e-25 119.8 224 45.1
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.6e-24 117.1 184 46.2
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 8.1e-24 114.8 191 43.5
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.8e-23 113.6 167 46.1
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 2.3e-23 113.2 212 40.6
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 6.8e-23 111.7 194 43.3
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 8.9e-23 111.3 186 43.5
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.2e-22 110.9 187 41.2
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.5e-22 110.5 164 47.6
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.8e-22 108.6 193 43.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 9.9e-22 107.8 198 42.9
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 9.9e-22 107.8 198 42.9
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 9.9e-22 107.8 198 42.9
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 1.7e-21 107.1 213 39.0
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.2e-21 106.7 195 43.1
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.7e-21 105.9 198 44.9
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.7e-21 105.9 193 43.0
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.7e-21 105.9 186 43.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.9e-21 105.5 193 43.0
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 8.3e-21 104.8 195 41.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.1e-20 104.4 164 41.5
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 4.1e-20 102.4 194 41.8
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 9.2e-20 101.3 184 42.9
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.6e-19 100.5 174 44.8
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.6e-19 100.5 60 76.7
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 7.8e-19 98.2 178 44.4
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.3e-17 92.8 169 41.4
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.6e-16 90.5 198 39.4
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.6e-16 90.5 193 37.8
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.6e-16 89.4 168 38.7
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 6.2e-16 88.6 61 67.2
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.4e-15 86.7 81 56.8
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 8.9e-15 84.7 180 37.2
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.5e-14 84.0 184 35.9
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 8.4e-13 78.2 143 45.5
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 4.2e-12 75.9 79 50.6
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 2.1e-11 73.6 82 57.3
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 3.5e-11 72.8 167 33.5
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 4.6e-11 72.4 221 33.0
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 4.6e-11 72.4 190 36.3
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 4.3e-09 65.9 92 45.7
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.4e-07 60.1 71 57.7
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.4e-07 60.1 71 54.9
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 9.9e-06 54.7 75 45.3


User provided reference genes

Program Settings