Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 4.3e-62 241.1 120 100.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 8.2e-37 157.1 120 65.0
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 9.1e-28 127.1 119 53.8
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 2.0e-27 125.9 119 58.0
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 2.2e-26 122.5 125 55.2
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.5e-25 119.8 125 51.2
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 3.2e-25 118.6 123 53.7
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 9.4e-25 117.1 91 64.8
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 1.2e-24 116.7 124 51.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 2.1e-24 115.9 127 52.8
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 2.7e-24 115.5 123 52.8
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 3.6e-24 115.2 122 54.9
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.6e-24 115.2 109 52.3
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 4.7e-24 114.8 122 55.7
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 4.7e-24 114.8 102 58.8
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 4.7e-24 114.8 113 54.0
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 4.7e-24 114.8 113 54.0
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 8.0e-24 114.0 122 51.6
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 8.0e-24 114.0 122 51.6
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.8e-23 112.8 124 52.4
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 8.8e-23 110.5 91 61.5
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.2e-22 110.2 122 47.5
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 2.0e-22 109.4 123 49.6
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.3e-22 108.6 96 57.3
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 5.7e-22 107.8 120 49.2
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 9.7e-22 107.1 99 51.5
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 2.8e-21 105.5 125 48.0
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 3.7e-21 105.1 111 51.4
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 4.8e-21 104.8 90 57.8
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 6.3e-21 104.4 64 70.3
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 6.3e-21 104.4 64 70.3
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 8.3e-21 104.0 127 44.9
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 8.3e-21 104.0 64 70.3
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 8.3e-21 104.0 125 44.0
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 1.1e-20 103.6 121 48.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 1.1e-20 103.6 114 49.1
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 1.4e-20 103.2 91 59.3
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 2.4e-20 102.4 123 48.0
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 3.1e-20 102.1 95 56.8
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.0e-20 100.9 103 55.3
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 1.6e-19 99.8 72 62.5
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 3.5e-19 98.6 102 50.0
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 4.5e-19 98.2 109 51.4
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 4.5e-19 98.2 88 58.0
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 4.5e-19 98.2 110 44.5
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 5.9e-19 97.8 123 47.2
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 8.5e-18 94.0 94 51.1
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.9e-17 92.8 56 71.4
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 2.5e-17 92.4 84 56.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 3.2e-17 92.0 56 69.6
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 9.4e-17 90.5 94 51.1
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 4.7e-16 88.2 103 47.6
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 4.7e-16 88.2 75 57.3
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.0e-15 87.0 109 45.0
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 1.0e-15 87.0 107 52.3
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 9.8e-14 80.5 97 49.5
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 9.8e-14 80.5 56 64.3
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.4e-12 76.6 105 47.6
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.8e-10 68.6 45 68.9
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.8e-10 68.6 45 68.9
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.6e-08 63.2 75 48.0
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 1.6e-08 63.2 110 38.2
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 2.1e-08 62.8 64 50.0
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 2.1e-08 62.8 64 50.0
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 4.7e-08 61.6 64 48.4
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 4.7e-08 61.6 64 48.4
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 6.1e-08 61.2 77 42.9
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 8.0e-08 60.8 38 68.4
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 8.0e-08 60.8 72 45.8
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 8.0e-08 60.8 99 38.4
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.3e-07 59.3 40 62.5
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 5.2e-07 58.2 37 67.6
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 5.2e-07 58.2 37 67.6
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 5.2e-07 58.2 37 67.6
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 1.5e-06 56.6 107 36.4
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 5.7e-06 54.7 102 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 9.8e-06 53.9 34 61.8


User provided reference genes

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