Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.6e-45 184.1 88 100.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.1e-38 162.9 88 89.8
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.0e-25 116.7 89 73.0
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.1e-14 83.2 88 55.7
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 6.7e-12 73.9 95 54.7
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 6.7e-12 73.9 89 49.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-11 72.8 91 53.8
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 2.5e-11 72.0 60 61.7
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 4.3e-11 71.2 43 74.4
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 4.3e-11 71.2 93 44.1
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.7e-11 70.9 91 51.6
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.7e-11 70.1 60 61.7
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 9.7e-11 70.1 67 53.7
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 9.7e-11 70.1 89 50.6
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.3e-10 69.7 87 52.9
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-10 69.7 43 72.1
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.3e-10 69.7 94 51.1
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.2e-10 68.9 93 48.4
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 2.8e-10 68.6 90 48.9
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.8e-10 68.6 46 69.6
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.8e-10 68.6 46 69.6
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 2.8e-10 68.6 95 48.4
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.7e-10 68.2 94 51.1
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.3e-10 67.4 89 47.2
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 8.2e-10 67.0 94 48.9
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 8.2e-10 67.0 82 48.8
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 8.2e-10 67.0 83 47.0
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.2e-10 67.0 89 47.2
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.2e-10 67.0 53 62.3
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 8.2e-10 67.0 37 81.1
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 8.2e-10 67.0 37 81.1
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.1e-09 66.6 96 47.9
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-09 66.2 89 47.2
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.4e-09 66.2 89 46.1
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.4e-09 66.2 46 65.2
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.4e-09 66.2 96 44.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 1.8e-09 65.9 74 50.0
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.8e-09 65.9 92 42.4
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.8e-09 65.9 76 50.0
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-09 65.5 46 65.2
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.1e-09 65.1 43 65.1
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.1e-09 64.7 50 62.0
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 4.1e-09 64.7 88 44.3
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 5.3e-09 64.3 95 45.3
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 5.3e-09 64.3 60 55.0
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 5.3e-09 64.3 90 47.8
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.3e-09 64.3 69 55.1
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.1e-09 63.5 58 56.9
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 9.1e-09 63.5 47 68.1
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.2e-08 63.2 74 51.4
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.2e-08 63.2 67 53.7
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.2e-08 63.2 41 68.3
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.5e-08 62.8 35 80.0
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-08 62.8 103 47.6
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 2.0e-08 62.4 85 45.9
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.0e-08 62.4 92 47.8
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.0e-08 62.4 35 80.0
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 2.0e-08 62.4 35 80.0
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.6e-08 62.0 40 75.0
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.6e-08 62.0 100 46.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.6e-08 62.0 100 46.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.6e-08 62.0 100 46.0
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 2.6e-08 62.0 90 43.3
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.6e-08 62.0 89 44.9
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 2.6e-08 62.0 86 45.3
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.4e-08 61.6 35 77.1
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 3.4e-08 61.6 34 79.4
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 4.5e-08 61.2 87 46.0
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.5e-08 61.2 37 73.0
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.5e-08 61.2 39 71.8
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 5.9e-08 60.8 64 54.7
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 5.9e-08 60.8 47 61.7
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.9e-08 60.8 34 79.4
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 7.7e-08 60.5 102 42.2
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 7.7e-08 60.5 91 48.4
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 7.7e-08 60.5 51 58.8
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.0e-07 60.1 35 77.1
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.0e-07 60.1 99 43.4
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.0e-07 60.1 35 80.0
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 1.0e-07 60.1 44 65.9
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.0e-07 60.1 43 67.4
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.0e-07 60.1 33 81.8
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.0e-07 60.1 35 77.1
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-07 59.3 97 44.3
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.7e-07 59.3 97 44.3
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.7e-07 59.3 90 46.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.7e-07 59.3 33 78.8
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 2.2e-07 58.9 98 45.9
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-07 58.9 95 42.1
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.2e-07 58.9 34 73.5
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.9e-07 58.5 32 81.2
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.9e-07 58.5 96 41.7
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 2.9e-07 58.5 79 44.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 3.8e-07 58.2 32 81.2
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 3.8e-07 58.2 88 45.5
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 3.8e-07 58.2 56 53.6
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.8e-07 58.2 65 50.8
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.8e-07 58.2 65 50.8
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 6.5e-07 57.4 38 68.4
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 8.5e-07 57.0 90 42.2
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 8.5e-07 57.0 51 58.8
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 8.5e-07 57.0 87 47.1
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.5e-07 57.0 33 78.8
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 8.5e-07 57.0 44 59.1
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 8.5e-07 57.0 45 57.8
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.1e-06 56.6 65 50.8
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-06 56.6 32 78.1
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-06 56.6 62 50.0
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.1e-06 56.6 44 63.6
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.1e-06 56.6 34 76.5
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.1e-06 56.6 52 55.8
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.1e-06 56.6 91 48.4
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.1e-06 56.6 59 50.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.1e-06 56.6 56 51.8
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.4e-06 56.2 89 42.7
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-06 56.2 58 50.0
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.4e-06 56.2 58 50.0
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.4e-06 56.2 68 50.0
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.4e-06 56.2 68 50.0
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.4e-06 56.2 93 44.1
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.9e-06 55.8 89 44.9
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.9e-06 55.8 37 70.3
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 1.9e-06 55.8 78 46.2
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.9e-06 55.8 34 73.5
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 2.5e-06 55.5 31 80.6
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.5e-06 55.5 32 81.2
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.5e-06 55.5 57 52.6
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 3.2e-06 55.1 88 48.9
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 3.2e-06 55.1 44 65.9
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 3.2e-06 55.1 33 75.8
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.2e-06 54.7 31 77.4
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.2e-06 54.7 89 44.9
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.2e-06 54.7 95 45.3
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 7.2e-06 53.9 30 80.0
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 7.2e-06 53.9 37 67.6
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 7.2e-06 53.9 30 83.3
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 9.4e-06 53.5 30 80.0
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 9.4e-06 53.5 30 80.0
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 9.4e-06 53.5 30 80.0
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 9.4e-06 53.5 85 42.4


User provided reference genes

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