Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.1e-220 768.8 418 100.0
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.0e-163 578.9 399 79.4
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.0e-154 549.7 404 79.0
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.2e-147 525.0 410 74.9
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 2.5e-141 506.1 335 74.6
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 2.1e-140 503.1 285 82.5
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 6.8e-139 498.0 290 80.7
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.4e-138 495.7 337 72.1
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 7.6e-138 494.6 285 81.8
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 7.6e-138 494.6 286 81.8
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 7.6e-138 494.6 283 82.0
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 9.9e-138 494.2 411 68.6
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 9.9e-138 494.2 285 82.5
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.7e-137 493.4 294 77.9
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.2e-137 493.0 421 67.9
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.2e-137 493.0 285 81.1
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.9e-137 492.7 409 66.5
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.9e-137 492.7 285 81.4
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 2.9e-137 492.7 285 81.4
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.8e-137 492.3 284 80.3
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.4e-137 491.5 285 80.7
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.9e-136 490.0 351 71.2
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.9e-136 490.0 343 70.8
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 7.8e-135 484.6 334 73.4
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.3e-134 483.8 259 85.7
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.3e-134 483.8 349 71.1
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 3.9e-134 482.3 260 85.8
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 3.9e-134 482.3 259 85.3
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 5.1e-134 481.9 285 79.3
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 5.1e-134 481.9 283 79.5
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.9e-133 479.9 329 74.5
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.5e-133 479.6 401 65.1
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 2.5e-133 479.6 262 83.2
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 3.3e-133 479.2 285 77.9
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 7.3e-133 478.0 265 81.9
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 9.6e-133 477.6 423 62.9
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.2e-132 477.2 262 83.2
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.2e-132 477.2 285 77.5
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.6e-132 476.9 333 71.5
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 3.6e-132 475.7 280 81.1
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 3.6e-132 475.7 353 70.0
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.7e-132 475.3 329 75.7
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 8.1e-132 474.6 269 80.3
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.8e-131 473.4 258 83.7
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.8e-131 473.4 260 83.1
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.8e-131 473.4 291 75.9
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 3.1e-131 472.6 262 82.1
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 4.0e-131 472.2 258 83.3
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 6.9e-131 471.5 291 75.6
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 8.9e-131 471.1 268 80.6
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 8.9e-131 471.1 308 72.7
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.2e-130 470.7 258 82.9
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.2e-130 470.7 260 83.1
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.5e-130 470.3 268 79.9
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.0e-130 469.9 285 76.5
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.4e-130 469.2 327 70.6
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.4e-130 469.2 280 76.8
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.8e-130 468.4 327 70.0
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 7.6e-130 468.0 256 81.6
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 9.9e-130 467.6 282 77.7
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.7e-129 466.8 264 80.7
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.2e-129 466.5 292 75.3
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.9e-129 465.3 384 64.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 6.4e-129 464.9 288 76.7
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 6.4e-129 464.9 331 71.3
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 8.4e-129 464.5 335 68.7
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.9e-128 463.4 394 61.2
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.9e-128 463.4 260 81.2
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 2.4e-128 463.0 295 73.2
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 3.2e-128 462.6 260 81.5
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 3.2e-128 462.6 260 81.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 5.4e-128 461.8 346 68.2
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 7.1e-128 461.5 314 73.6
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.2e-127 460.7 269 81.4
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 4.6e-127 458.8 345 67.2
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 7.8e-127 458.0 404 61.6
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 7.8e-127 458.0 327 68.8
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.0e-126 457.6 334 70.1
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.3e-126 457.2 254 82.3
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 3.0e-126 456.1 285 74.7
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 3.0e-126 456.1 411 60.8
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 3.9e-126 455.7 410 61.5
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 6.6e-126 454.9 313 72.8
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 8.7e-126 454.5 348 66.1
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.5e-125 453.8 285 74.7
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.5e-125 453.0 288 74.7
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.5e-125 453.0 254 81.5
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 4.3e-125 452.2 285 74.4
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 6.2e-124 448.4 415 59.8
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 6.2e-124 448.4 336 67.3
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 8.1e-124 448.0 325 68.3
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 8.1e-124 448.0 349 65.0
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 1.8e-123 446.8 240 85.0
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.3e-123 445.3 293 72.0
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 5.3e-123 445.3 290 74.1
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.2e-122 444.1 276 73.6
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.5e-122 443.7 286 72.7
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.5e-122 442.2 295 71.9
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 7.6e-122 441.4 286 72.4
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 4.9e-121 438.7 288 72.2
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.1e-120 437.6 263 76.4
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 3.2e-120 436.0 289 72.7
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 5.4e-120 435.3 240 83.3
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.6e-119 433.7 262 77.1
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 2.1e-119 433.3 263 76.8
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.1e-117 427.6 292 74.3
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.3e-116 424.1 294 71.4
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.6e-116 423.7 344 63.4
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.4e-115 420.6 338 64.2
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.6e-111 407.1 329 62.9
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.3e-110 403.3 245 78.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 3.0e-110 402.9 299 65.6
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 5.6e-109 398.7 362 56.6
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.5e-104 382.1 260 71.2
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.3e-102 376.7 212 79.2
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 5.7e-101 372.1 204 79.4
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.4e-99 366.7 277 65.7
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.3e-97 360.9 303 57.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.1e-95 353.6 301 56.8
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 8.7e-94 348.2 184 85.3
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 2.5e-93 346.7 330 52.4
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.6e-87 326.2 250 72.4
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 4.8e-84 315.8 173 84.4
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 4.8e-84 315.8 173 84.4
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 4.1e-83 312.8 173 82.1
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 6.9e-83 312.0 270 57.4
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 5.9e-82 308.9 197 73.6
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.3e-81 307.8 177 81.4
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.5e-80 303.5 279 55.6
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.0e-78 296.6 317 52.4
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.9e-78 296.2 211 69.2
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.6e-77 293.5 183 74.3
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.8e-76 290.0 277 56.0
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 3.7e-76 289.7 279 55.2
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.7e-71 273.5 261 59.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 7.5e-69 265.4 314 47.1
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.6e-66 257.7 234 53.8
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.3e-65 254.6 242 51.7
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 9.4e-64 248.4 254 57.9
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.5e-61 241.1 265 61.1
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 7.5e-61 238.8 259 60.6
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.3e-60 238.0 191 59.7
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-59 235.0 202 67.3
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 6.3e-52 209.1 223 47.1
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.1e-51 208.4 230 49.6
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.1e-51 208.4 206 49.5
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 6.1e-47 192.6 249 43.0
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 8.9e-46 188.7 221 47.5
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 6.2e-39 166.0 128 60.2
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.1e-38 165.2 124 59.7
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 3.4e-37 160.2 84 81.0
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.1e-30 138.7 81 74.1
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 9.2e-19 99.0 50 78.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 9.2e-19 99.0 50 78.0
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 9.6e-16 89.0 54 72.2
PRCOL_00003402 Prasinoderma coloniale HOM05D034583 ORTHO05D334032 3.5e-10 70.5 159 31.4
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.3e-08 63.5 165 27.3
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 8.1e-07 59.3 148 27.7


User provided reference genes

Program Settings