Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15189 Nelumbo nucifera HOM05D000588 ORTHO05D004275 2.0e-59 232.3 121 100.0
Nn2g10372 Nelumbo nucifera HOM05D000588 ORTHO05D004275 6.3e-45 184.1 126 81.0
Nn5g26920 Nelumbo nucifera HOM05D000588 ORTHO05D004275 8.9e-31 137.1 130 64.6
TAR633G2704 Trochodendron aralioides HOM05D000588 ORTHO05D004275 5.9e-27 124.4 126 57.9
COL.COLO4_18502 Corchorus olitorius HOM05D000588 ORTHO05D004275 1.3e-26 123.2 128 59.4
Duzib170G0065 Durio zibethinus HOM05D000588 ORTHO05D004275 3.0e-26 122.1 128 60.2
TAR623G0371 Trochodendron aralioides HOM05D000588 ORTHO05D004275 5.0e-26 121.3 126 57.9
Thecc.09G322200 Theobroma cacao HOM05D000588 ORTHO05D004275 1.1e-25 120.2 128 60.2
Ciclev10028444m.g Citrus clementina HOM05D000588 ORTHO05D004275 1.5e-25 119.8 128 57.0
Actinidia37205 Actinidia chinensis HOM05D000588 ORTHO05D004275 7.3e-25 117.5 126 58.7
CiPaw.14G068600 Carya illinoinensis HOM05D000588 ORTHO05D004275 1.2e-24 116.7 125 56.8
Gohir.A07G098300 Gossypium hirsutum HOM05D000588 ORTHO05D004275 1.0e-23 113.6 127 56.7
Gorai.001G110500 Gossypium raimondii HOM05D000588 ORTHO05D004275 1.0e-23 113.6 127 56.7
Manes.04G034700 Manihot esculenta HOM05D000588 ORTHO05D004275 1.4e-23 113.2 128 54.7
CSS0007929 Camellia sinensis var. sinensis HOM05D000588 ORTHO05D004275 1.8e-23 112.8 126 59.5
Duzib168G2354 Durio zibethinus HOM05D000588 ORTHO05D004275 5.2e-23 111.3 128 53.9
Manes.11G130800 Manihot esculenta HOM05D000588 ORTHO05D004275 6.8e-23 110.9 130 53.8
Gohir.D07G102600 Gossypium hirsutum HOM05D000588 ORTHO05D004275 8.9e-23 110.5 127 55.9
Haze_24091 Corylus avellana HOM05D000588 ORTHO05D004275 4.4e-22 108.2 108 59.3
Gohir.D03G125900 Gossypium hirsutum HOM05D000588 ORTHO05D004275 7.5e-22 107.5 128 56.2
Gorai.003G132100 Gossypium raimondii HOM05D000588 ORTHO05D004275 7.5e-22 107.5 128 56.2
PGSC0003DMG400030411 Solanum tuberosum HOM05D000588 ORTHO05D004275 9.8e-22 107.1 105 58.1
CANSAT21G2213 Cannabis sativa HOM05D000588 ORTHO05D004275 1.3e-21 106.7 133 51.9
QL01p032133 Quercus lobata HOM05D000588 ORTHO05D004275 1.3e-21 106.7 129 52.7
Nitab4.5_0000514g0120 Nicotiana tabacum HOM05D000588 ORTHO05D004275 3.7e-21 105.1 126 50.8
Atru.chr3.3897 Acer truncatum HOM05D000588 ORTHO05D004275 4.9e-21 104.8 127 52.0
CiPaw.13G094900 Carya illinoinensis HOM05D000588 ORTHO05D004275 6.4e-21 104.4 110 59.1
Prupe.6G078300 Prunus persica HOM05D000588 ORTHO05D004275 6.4e-21 104.4 129 53.5
TAR625G0646 Trochodendron aralioides HOM05D000588 ORTHO05D004275 1.4e-20 103.2 127 53.5
Sopen06g032520 Solanum pennellii HOM05D000588 ORTHO05D004275 2.4e-20 102.4 105 59.0
Hma1.2p1_0418F.1_g149060 Hydrangea macrophylla HOM05D000588 ORTHO05D004275 5.4e-20 101.3 127 53.5
Cfa011497 Carpinus fangiana HOM05D000588 ORTHO05D004275 7.0e-20 100.9 109 56.9
Lj1P154T18 Lonicera japonica HOM05D000588 ORTHO05D004275 7.0e-20 100.9 126 54.0
Glyma.09G048100 Glycine max HOM05D000588 ORTHO05D004275 9.2e-20 100.5 126 50.8
VMungo1309G0153 Vigna mungo HOM05D000588 ORTHO05D004275 9.2e-20 100.5 127 52.0
Eucgr.B02370 Eucalyptus grandis HOM05D000588 ORTHO05D004275 1.2e-19 100.1 127 52.0
CsaV3_1G034110 Cucumis sativus L. HOM05D000588 ORTHO05D004275 1.6e-19 99.8 127 52.8
Nitab4.5_0002403g0050 Nicotiana tabacum HOM05D000588 ORTHO05D004275 1.6e-19 99.8 125 49.6
Cpa.g.sc1351.1 Carica papaya HOM05D000588 ORTHO05D004275 2.0e-19 99.4 131 52.7
arahy.Tifrunner.gnm1.ann1.42PK2U Arachis hypogaea HOM05D000588 ORTHO05D004275 2.7e-19 99.0 131 51.1
Glyma.15G155400 Glycine max HOM05D000588 ORTHO05D004275 2.7e-19 99.0 126 49.2
MELO3C020643.2 Cucumis melo HOM05D000588 ORTHO05D004275 6.0e-19 97.8 127 52.8
MD11G1109900 Malus domestica HOM05D000588 ORTHO05D004275 6.0e-19 97.8 126 50.8
Lj6g0012231 Lotus japonicus HOM05D000588 ORTHO05D004275 7.8e-19 97.4 126 46.0
Peaxi162Scf00774g00007 Petunia axillaris HOM05D000588 ORTHO05D004275 7.8e-19 97.4 113 49.6
Phvul.009G244800 Phaseolus vulgaris HOM05D000588 ORTHO05D004275 7.8e-19 97.4 127 51.2
Lalb_Chr15g0083661 Lupinus albus HOM05D000588 ORTHO05D004275 1.0e-18 97.1 130 49.2
arahy.Tifrunner.gnm1.ann1.60SBBK Arachis hypogaea HOM05D000588 ORTHO05D004275 1.7e-18 96.3 126 50.8
PGSC0003DMG400018093 Solanum tuberosum HOM05D000588 ORTHO05D004275 1.7e-18 96.3 127 45.7
Cc01_g12820 Coffea canephora HOM05D000588 ORTHO05D004275 2.3e-18 95.9 129 47.3
CAN.G394.55 Capsicum annuum HOM05D000588 ORTHO05D004275 3.0e-18 95.5 96 59.4
Ca_02403_v3 Cicer arietinum L. HOM05D000588 ORTHO05D004275 3.0e-18 95.5 128 47.7
Nitab4.5_0006166g0020 Nicotiana tabacum HOM05D000588 ORTHO05D004275 3.0e-18 95.5 105 56.2
Actinidia23942 Actinidia chinensis HOM05D000588 ORTHO05D004275 5.0e-18 94.7 122 49.2
Solyc03g112880.1 Solanum lycopersicum HOM05D000588 ORTHO05D004275 6.6e-18 94.4 127 46.5
Sopen03g031960 Solanum pennellii HOM05D000588 ORTHO05D004275 6.6e-18 94.4 127 46.5
PSO339G2986 Papaver somniferum HOM05D000588 ORTHO05D004275 2.5e-17 92.4 130 53.1
PSO384G2134 Papaver somniferum HOM05D000588 ORTHO05D004275 2.5e-17 92.4 130 53.1
Nn3g19645 Nelumbo nucifera HOM05D000588 ORTHO05D004275 4.3e-17 91.7 70 74.3
ClCG03G001570 Citrullus lanatus HOM05D000588 ORTHO05D004275 9.5e-17 90.5 109 55.0
Peaxi162Scf00089g01810 Petunia axillaris HOM05D000588 ORTHO05D004275 9.5e-17 90.5 110 52.7
MSTRG.18582 Avicennia marina HOM05D000588 ORTHO05D004275 1.2e-16 90.1 127 44.9
MBI05_g22049_MAGBIO Magnolia biondii HOM05D000588 ORTHO05D004275 1.2e-16 90.1 129 51.2
Potri.018G097000 Populus trichocarpa HOM05D000588 ORTHO05D004275 1.2e-16 90.1 124 48.4
PGR102G2795 Punica granatum HOM05D000588 ORTHO05D004275 1.2e-16 90.1 126 49.2
Rhsim01G0227300 Rhododendron simsii HOM05D000588 ORTHO05D004275 1.6e-16 89.7 126 48.4
RcHm_v2.0_Chr5g0064411 Rosa chinensis HOM05D000588 ORTHO05D004275 1.6e-16 89.7 124 51.6
Sabra18G0084200 Salix brachista HOM05D000588 ORTHO05D004275 2.1e-16 89.4 106 51.9
Potri.006G174900 Populus trichocarpa HOM05D000588 ORTHO05D004275 3.6e-16 88.6 127 47.2
MSTRG.12648 Avicennia marina HOM05D000588 ORTHO05D004275 4.7e-16 88.2 113 46.9
CDE04G3587 Ceratophyllum demersum HOM05D000588 ORTHO05D004275 1.1e-15 87.0 115 50.4
Sed0018795 Sechium edule HOM05D000588 ORTHO05D004275 1.4e-15 86.7 107 54.2
CDE07G0122 Ceratophyllum demersum HOM05D000588 ORTHO05D004275 3.1e-15 85.5 122 49.2
Aqoxy4G02917 Aquilegia oxysepala HOM05D000588 ORTHO05D004275 4.0e-15 85.1 133 43.6
Lalb_Chr20g0114361 Lupinus albus HOM05D000588 ORTHO05D004275 4.0e-15 85.1 126 45.2
FAN25G0853 Fragaria x ananassa HOM05D000588 ORTHO05D004275 1.2e-14 83.6 124 50.0
FAN21G1353 Fragaria x ananassa HOM05D000588 ORTHO05D004275 2.0e-14 82.8 124 50.0
SalBow3G2904 Salvia bowleyana HOM05D000588 ORTHO05D004275 2.0e-14 82.8 128 43.8
THA.LOC104815792 Tarenaya hassleriana HOM05D000588 ORTHO05D004275 2.0e-14 82.8 129 47.3
FvH4_3g36000 Fragaria vesca HOM05D000588 ORTHO05D004275 2.6e-14 82.4 124 50.0
Lj2A1062T47 Lonicera japonica HOM05D000588 ORTHO05D004275 2.6e-14 82.4 121 43.8
FAN16G3196 Fragaria x ananassa HOM05D000588 ORTHO05D004275 3.4e-14 82.0 124 50.0
Medtr2g437700 Medicago truncatula HOM05D000588 ORTHO05D004275 3.4e-14 82.0 107 46.7
AUR62009579 Chenopodium quinoa HOM05D000588 ORTHO05D004275 4.4e-14 81.6 129 45.0
AUR62001791 Chenopodium quinoa HOM05D000588 ORTHO05D004275 9.8e-14 80.5 131 45.0
FAN11G0300 Fragaria x ananassa HOM05D000588 ORTHO05D004275 9.8e-14 80.5 124 49.2
Oeu019197.1 Olea europaea HOM05D000588 ORTHO05D004275 1.3e-13 80.1 125 48.8
CSS0046782 Camellia sinensis var. sinensis HOM05D000588 ORTHO05D004275 1.7e-13 79.7 128 49.2
SalBow2G2620 Salvia bowleyana HOM05D000588 ORTHO05D004275 2.9e-13 79.0 96 53.1
Oeu054146.1 Olea europaea HOM05D000588 ORTHO05D004275 3.7e-13 78.6 124 47.6
Os01g0841100 Oryza sativa ssp. japonica HOM05D000588 ORTHO05D004275 3.7e-13 78.6 120 45.0
CAN.G1305.32 Capsicum annuum HOM05D000588 ORTHO05D004275 4.9e-13 78.2 128 41.4
Migut.D02106 Erythranthe guttata HOM05D002226 ORTHO05D004275 6.4e-13 77.8 108 51.9
Sc21g0005760 Simmondsia chinensis HOM05D000588 ORTHO05D004275 6.4e-13 77.8 125 44.8
DCAR_015624 Daucus carota HOM05D000588 ORTHO05D004275 1.4e-12 76.6 126 46.0
Zm00001eb367960 Zea mays HOM05D000588 ORTHO05D004275 1.4e-12 76.6 106 42.5
TWI31G1202 Tripterygium wilfordii HOM05D000588 ORTHO05D004275 1.9e-12 76.3 125 47.2
HanXRQChr05g0134901 Helianthus annuus HOM05D000588 ORTHO05D004275 3.2e-12 75.5 119 46.2
Psat1g151360 Pisum sativum HOM05D000588 ORTHO05D004275 4.1e-12 75.1 108 46.3
Migut.N02676 Erythranthe guttata HOM05D000588 ORTHO05D004275 7.1e-12 74.3 126 41.3
Ah.08g219490 Amaranthus hybridus HOM05D000588 ORTHO05D004275 9.2e-12 73.9 131 44.3
Nitab4.5_0003753g0010 Nicotiana tabacum HOM05D000588 ORTHO05D004275 9.2e-12 73.9 84 56.0
EL10Ac7g16014 Beta vulgaris HOM05D000588 ORTHO05D004275 1.2e-11 73.6 82 61.0
THA.LOC104799443 Tarenaya hassleriana HOM05D000588 ORTHO05D004275 1.6e-11 73.2 128 43.0
unitig_90.g27565 Utricularia gibba HOM05D000588 ORTHO05D004275 2.1e-11 72.8 95 52.6
SHI05949 Sapria himalayana HOM05D000588 ORTHO05D004275 3.5e-11 72.0 112 42.9
Lsat_1_v5_gn_8_73140 Lactuca sativa HOM05D000588 ORTHO05D004275 4.6e-11 71.6 109 48.6
Os05g0459700 Oryza sativa ssp. japonica HOM05D000588 ORTHO05D004275 1.0e-10 70.5 92 47.8
THA.LOC104810781 Tarenaya hassleriana HOM05D000588 ORTHO05D004275 1.0e-10 70.5 121 43.8
HanXRQChr11g0350861 Helianthus annuus HOM05D000588 ORTHO05D004275 5.1e-10 68.2 122 45.9
CARHR155250 Cardamine hirsuta HOM05D000588 ORTHO05D004275 1.9e-09 66.2 123 43.1
Lsat_1_v5_gn_9_23341 Lactuca sativa HOM05D000588 ORTHO05D004275 1.9e-09 66.2 125 43.2
Ah.15g097240 Amaranthus hybridus HOM05D000588 ORTHO05D004275 2.5e-09 65.9 105 46.7
ECA236G3501 Erigeron canadensis HOM05D000588 ORTHO05D004275 4.3e-09 65.1 120 46.7
AT3G46550 Arabidopsis thaliana HOM05D000588 ORTHO05D004275 5.6e-09 64.7 120 47.5
Carub.0005s1282 Capsella rubella HOM05D000588 ORTHO05D004275 5.6e-09 64.7 122 42.6
unitig_736.g22965 Utricularia gibba HOM05D000588 ORTHO05D004275 7.3e-09 64.3 81 50.6
SGA_v2.0_scaffold203G41509 Striga asiatica HOM05D000588 ORTHO05D004275 9.5e-09 63.9 94 45.7
ATR0559G275 Amborella trichopoda HOM05D000588 ORTHO05D004275 1.6e-08 63.2 93 43.0
AL5G25410 Arabidopsis lyrata HOM05D000588 ORTHO05D004275 1.6e-08 63.2 118 46.6
Nn4g22602 Nelumbo nucifera HOM05D000588 ORTHO05D004275 2.1e-08 62.8 54 70.4
TPR.G30928 Trifolium pratense HOM05D000588 ORTHO05D004275 2.1e-08 62.8 126 38.1
TWI79G0909 Tripterygium wilfordii HOM05D000588 ORTHO05D004275 2.8e-08 62.4 126 38.9
Zm00001eb289670 Zea mays HOM05D000588 ORTHO05D004275 2.8e-08 62.4 100 42.0
Thhalv10002543m.g Eutrema salsugineum HOM05D000588 ORTHO05D004275 3.6e-08 62.0 126 42.1
SEGI_34657 Sequoiadendron giganteum HOM05D000588 ORTHO05D004275 3.6e-08 62.0 90 45.6
MSTRG.21200 Avicennia marina HOM05D000588 ORTHO05D004275 4.7e-08 61.6 124 39.5
CSS0025492 Camellia sinensis var. sinensis HOM05D000588 ORTHO05D112867 8.1e-08 60.8 41 75.6
Sp5g15140 Schrenkiella parvula HOM05D000588 ORTHO05D004275 8.1e-08 60.8 134 41.8
Aa31LG4G15550 Aethionema arabicum HOM05D000588 ORTHO05D004275 1.1e-07 60.5 125 42.4
BcaC01g01907 Brassica carinata HOM05D000588 ORTHO05D004275 4.0e-07 58.5 128 38.3
BraA06t25168Z Brassica rapa HOM05D000588 ORTHO05D004275 4.0e-07 58.5 128 39.8
A06p20870 Brassica napus HOM05D000588 ORTHO05D004275 5.2e-07 58.2 128 39.8
C03p70730 Brassica napus HOM05D000588 ORTHO05D004275 1.5e-06 56.6 128 39.1
BolC3t19345H Brassica oleracea HOM05D000588 ORTHO05D004275 1.5e-06 56.6 128 39.1
ATR0665G173 Amborella trichopoda HOM05D000588 ORTHO05D004275 2.6e-06 55.8 91 41.8
Dinv12419 Davidia involucrata HOM05D000588 ORTHO05D004275 3.4e-06 55.5 75 46.7
SEGI_38266 Sequoiadendron giganteum HOM05D000588 ORTHO05D004275 4.4e-06 55.1 61 49.2


User provided reference genes

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