Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1939.5 938 100.0
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1567.0 940 78.8
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1389.0 944 70.1
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1273.1 926 65.2
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1266.5 926 65.4
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1253.8 936 63.2
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1247.3 943 63.5
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1244.2 929 63.5
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1237.6 924 63.3
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1236.9 931 62.7
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1229.5 927 62.7
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1226.8 927 62.5
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1226.5 965 60.7
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1225.3 925 62.6
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1224.2 948 61.3
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1221.8 925 62.4
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1219.9 948 61.7
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1213.4 948 61.3
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1205.7 929 61.5
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1204.1 946 60.9
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1189.5 934 60.8
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1187.6 935 61.5
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1179.5 935 61.1
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1173.7 941 59.5
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1169.1 921 59.6
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1165.2 910 61.2
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1162.5 906 61.3
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1157.9 846 64.4
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1153.7 936 61.0
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1141.3 822 63.7
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1141.3 920 60.9
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1133.2 933 58.6
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1130.2 938 59.4
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1128.6 892 60.9
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1125.5 934 58.5
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1125.2 819 65.0
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1122.1 942 59.3
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1119.4 920 59.3
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1114.0 910 58.6
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1105.9 918 58.3
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1100.5 934 56.7
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1094.0 867 60.0
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1092.8 906 57.4
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1092.0 926 56.4
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1080.1 794 63.4
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 0.0e+00 1078.2 933 55.6
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1076.6 936 56.0
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1075.8 901 57.2
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 1.3e-311 1072.8 920 55.3
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 5.8e-311 1070.8 912 58.1
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 7.7e-311 1070.5 917 57.0
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 3.7e-310 1068.1 885 58.4
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 4.9e-310 1067.8 939 55.7
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 3.1e-309 1065.1 924 56.5
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 2.3e-307 1058.9 903 57.1
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.1e-306 1056.6 923 55.1
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 9.5e-306 1053.5 946 54.2
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 3.7e-302 1041.6 948 54.2
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.1e-301 1040.0 825 62.3
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 1.8e-301 1039.3 912 55.0
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 6.6e-299 1030.8 922 55.3
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 1.9e-298 1029.2 908 54.8
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 6.2e-297 1024.2 984 53.8
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 8.0e-297 1023.8 950 53.7
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.4e-295 1018.5 872 56.2
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.7e-294 1016.1 902 55.8
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 8.3e-294 1013.8 906 54.5
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 8.3e-294 1013.8 953 52.9
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 9.2e-293 1010.4 911 54.8
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 1.6e-292 1009.6 909 54.7
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 4.6e-292 1008.1 714 65.4
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 1.0e-291 1006.9 909 54.7
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.0e-291 1006.9 902 55.4
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 6.8e-288 994.2 818 57.5
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 6.8e-288 994.2 818 57.5
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 4.9e-286 988.0 748 63.0
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 3.8e-278 961.8 935 50.3
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 2.1e-276 956.1 909 51.9
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.7e-275 953.0 940 52.7
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 3.3e-274 948.7 906 53.6
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 9.6e-274 947.2 810 56.4
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 1.2e-273 946.8 915 50.8
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.9e-269 932.9 746 59.7
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.4e-261 906.7 894 51.0
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 4.3e-258 895.2 636 65.3
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.2e-255 887.1 722 57.5
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.2e-245 852.0 626 63.9
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.5e-242 843.6 816 52.0
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.9e-221 773.5 946 46.0
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 5.5e-205 718.8 986 38.7
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 1.8e-203 713.8 492 66.9
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 3.7e-201 706.1 646 51.7
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 6.3e-201 705.3 582 57.6
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.6e-174 615.5 441 64.6
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.4e-168 597.0 520 55.8
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 6.2e-156 555.8 535 51.6
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.7e-150 537.7 499 53.1
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.4e-145 519.2 459 55.8
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.6e-132 478.0 894 32.6
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.3e-125 453.4 384 57.8
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 7.2e-120 436.0 382 56.0
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 5.5e-104 383.3 308 57.5
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 9.8e-77 292.7 288 54.2
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 2.8e-76 291.2 279 54.8
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 5.0e-73 280.4 244 60.2
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 9.5e-72 276.2 264 52.3
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.8e-70 271.9 210 62.9
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 2.7e-58 231.5 270 42.2
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 9.5e-56 223.0 257 50.2
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 3.5e-34 151.4 152 53.9
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 7.8e-34 150.2 152 53.3
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 1.7e-33 149.1 128 57.8
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 5.6e-32 144.1 90 67.8
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 1.2e-29 136.3 105 64.8
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.3e-24 118.2 222 32.9
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 1.2e-18 99.8 84 58.3
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 2.1e-15 89.0 96 47.9
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 2.0e-13 82.4 89 40.4
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 5.8e-13 80.9 90 43.3
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 2.7e-10 72.0 107 37.4
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 3.5e-10 71.6 41 75.6
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 4.6e-10 71.2 54 55.6
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 2.5e-08 65.5 169 27.8
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 6.3e-07 60.8 52 50.0


User provided reference genes

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