Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15161 Nelumbo nucifera HOM05D000167 ORTHO05D000465 5.3e-47 190.7 95 100.0
Nn1g05611 Nelumbo nucifera HOM05D000167 ORTHO05D000465 2.4e-15 85.5 70 64.3
Aqoxy2G01332 Aquilegia oxysepala HOM05D000167 ORTHO05D000465 1.1e-12 76.6 66 57.6
Aqoxy6G00845 Aquilegia oxysepala HOM05D000167 ORTHO05D000465 1.1e-12 76.6 66 57.6
Sc23g0002690 Simmondsia chinensis HOM05D000167 ORTHO05D000465 1.1e-12 76.6 69 55.1
GSVIVG01026986001 Vitis vinifera HOM05D000167 ORTHO05D000465 1.5e-12 76.3 68 54.4
Rhsim07G0012100 Rhododendron simsii HOM05D000167 ORTHO05D000465 5.5e-12 74.3 68 51.5
FvH4_7g15020 Fragaria vesca HOM05D000167 ORTHO05D000465 1.6e-11 72.8 88 47.7
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.6e-11 72.8 88 47.7
Rhsim07G0012000 Rhododendron simsii HOM05D000167 ORTHO05D000465 1.6e-11 72.8 68 50.0
TAR636G3577 Trochodendron aralioides HOM05D000167 ORTHO05D000465 1.6e-11 72.8 66 57.6
vmacro13248 Vaccinium macrocarpon HOM05D000167 ORTHO05D000465 2.1e-11 72.4 67 52.2
GSVIVG01026987001 Vitis vinifera HOM05D000167 ORTHO05D000465 2.1e-11 72.4 69 53.6
FAN01G1303 Fragaria x ananassa HOM05D000167 ORTHO05D000465 2.8e-11 72.0 85 49.4
vmacro13251 Vaccinium macrocarpon HOM05D000167 ORTHO05D000465 2.8e-11 72.0 77 49.4
TAR636G2220 Trochodendron aralioides HOM05D000167 ORTHO05D000465 3.6e-11 71.6 66 56.1
FAN10G1326 Fragaria x ananassa HOM05D000167 ORTHO05D000465 6.1e-11 70.9 85 49.4
Potri.002G162300 Populus trichocarpa HOM05D000167 ORTHO05D000465 6.1e-11 70.9 69 52.2
Manes.05G031400 Manihot esculenta HOM05D000167 ORTHO05D000465 8.0e-11 70.5 69 55.1
Rhsim07G0012200 Rhododendron simsii HOM05D000167 ORTHO05D000465 1.0e-10 70.1 64 54.7
Rhsim07G0012300 Rhododendron simsii HOM05D000167 ORTHO05D000465 1.4e-10 69.7 69 50.7
FAN10G4349 Fragaria x ananassa HOM05D000167 ORTHO05D000465 1.8e-10 69.3 82 50.0
Aqoxy6G00843 Aquilegia oxysepala HOM05D000167 ORTHO05D000465 4.0e-10 68.2 66 51.5
AUR62018828 Chenopodium quinoa HOM05D000167 ORTHO05D000465 4.0e-10 68.2 69 44.9
COL.COLO4_12752 Corchorus olitorius HOM05D000167 ORTHO05D000465 4.0e-10 68.2 66 56.1
MELO3C006093.2 Cucumis melo HOM05D000167 ORTHO05D000465 4.0e-10 68.2 69 53.6
Sed0025645 Sechium edule HOM05D000167 ORTHO05D000465 4.0e-10 68.2 68 51.5
TAR636G1859 Trochodendron aralioides HOM05D000167 ORTHO05D000465 4.0e-10 68.2 51 68.6
Ah.12g053930 Amaranthus hybridus HOM05D000167 ORTHO05D000465 5.2e-10 67.8 68 50.0
MBI16_g24845_MAGBIO Magnolia biondii HOM05D000167 ORTHO05D000465 5.2e-10 67.8 68 54.4
Sed0019552 Sechium edule HOM05D000167 ORTHO05D000465 8.8e-10 67.0 68 51.5
Thecc.01G355100 Theobroma cacao HOM05D000167 ORTHO05D000465 8.8e-10 67.0 63 55.6
vmacro13250 Vaccinium macrocarpon HOM05D000167 ORTHO05D000465 1.5e-09 66.2 67 47.8
CsaV3_3G008760 Cucumis sativus L. HOM05D000167 ORTHO05D000465 2.0e-09 65.9 69 50.7
Nitab4.5_0000200g0190 Nicotiana tabacum HOM05D000167 ORTHO05D000465 2.0e-09 65.9 68 50.0
Sed0026077 Sechium edule HOM05D000167 ORTHO05D000465 2.0e-09 65.9 68 48.5
ClCG05G001370 Citrullus lanatus HOM05D000167 ORTHO05D000465 4.4e-09 64.7 69 52.2
QL04p054573 Quercus lobata HOM05D000167 ORTHO05D000465 4.4e-09 64.7 68 50.0
QL04p054653 Quercus lobata HOM05D000167 ORTHO05D000465 4.4e-09 64.7 68 50.0
Dinv43848 Davidia involucrata HOM05D000137 ORTHO05D000382 5.7e-09 64.3 67 52.2
Potri.014G088400 Populus trichocarpa HOM05D000167 ORTHO05D000465 5.7e-09 64.3 69 47.8
QL04p054809 Quercus lobata HOM05D000167 ORTHO05D000465 5.7e-09 64.3 68 48.5
RcHm_v2.0_Chr1g0357061 Rosa chinensis HOM05D000167 ORTHO05D000465 5.7e-09 64.3 84 44.0
COL.COLO4_12755 Corchorus olitorius HOM05D000167 ORTHO05D000465 7.5e-09 63.9 51 62.7
Sabra14G0064000 Salix brachista HOM05D000167 ORTHO05D000465 7.5e-09 63.9 69 46.4
Sabra14G0064100 Salix brachista HOM05D000167 ORTHO05D000465 7.5e-09 63.9 69 46.4
Hma1.2p1_0623F.1_g190930 Hydrangea macrophylla HOM05D000167 ORTHO05D000465 9.8e-09 63.5 54 57.4
Hma1.2p1_1002F.1_g246640 Hydrangea macrophylla HOM05D000167 ORTHO05D000465 9.8e-09 63.5 71 49.3
Hma1.2p1_2571F.1_g324620 Hydrangea macrophylla HOM05D000167 ORTHO05D000465 9.8e-09 63.5 71 49.3
Psat4g156560 Pisum sativum HOM05D000167 ORTHO05D000465 9.8e-09 63.5 69 46.4
QL04p054495 Quercus lobata HOM05D000167 ORTHO05D000465 9.8e-09 63.5 66 50.0
Nitab4.5_0000858g0060 Nicotiana tabacum HOM05D000167 ORTHO05D000465 1.3e-08 63.2 68 48.5
Peaxi162Scf00020g00121 Petunia axillaris HOM05D000167 ORTHO05D000465 1.3e-08 63.2 73 50.7
Nitab4.5_0022406g0010 Nicotiana tabacum HOM05D000167 ORTHO05D000465 1.7e-08 62.8 73 47.9
Prupe.2G174700 Prunus persica HOM05D000167 ORTHO05D000465 1.7e-08 62.8 69 50.7
RcHm_v2.0_Chr1g0358331 Rosa chinensis HOM05D000167 ORTHO05D000465 1.7e-08 62.8 69 49.3
Actinidia20145 Actinidia chinensis HOM05D000167 ORTHO05D000465 2.2e-08 62.4 64 48.4
Prupe.2G174800 Prunus persica HOM05D000167 ORTHO05D000465 2.2e-08 62.4 69 50.7
QL04p054856 Quercus lobata HOM05D000167 ORTHO05D000465 2.2e-08 62.4 65 50.8
QL04p054920 Quercus lobata HOM05D000167 ORTHO05D000465 2.2e-08 62.4 66 51.5
RcHm_v2.0_Chr1g0358291 Rosa chinensis HOM05D000167 ORTHO05D000465 2.2e-08 62.4 69 49.3
Ah.12g053920 Amaranthus hybridus HOM05D000167 ORTHO05D000465 2.8e-08 62.0 69 43.5
Duzib138G0615 Durio zibethinus HOM05D000167 ORTHO05D000465 2.8e-08 62.0 54 55.6
Nitab4.5_0000690g0070 Nicotiana tabacum HOM05D000167 ORTHO05D000465 2.8e-08 62.0 67 50.7
TAR375G0944 Trochodendron aralioides HOM05D000167 ORTHO05D000465 2.8e-08 62.0 68 48.5
Gohir.A12G107700 Gossypium hirsutum HOM05D000167 ORTHO05D000465 3.7e-08 61.6 67 49.3
Ca_23596_v3 Cicer arietinum L. HOM05D000167 ORTHO05D000465 4.9e-08 61.2 69 44.9
PGR004G0049 Punica granatum HOM05D000167 ORTHO05D000465 4.9e-08 61.2 68 45.6
SalBow3G4085 Salvia bowleyana HOM05D000167 ORTHO05D000465 4.9e-08 61.2 53 60.4
ATR0767G067 Amborella trichopoda HOM05D000167 ORTHO05D000465 6.3e-08 60.8 67 46.3
Peaxi162Scf00775g00042 Petunia axillaris HOM05D000167 ORTHO05D000465 6.3e-08 60.8 69 47.8
Thecc.01G354900 Theobroma cacao HOM05D000167 ORTHO05D000465 6.3e-08 60.8 51 62.7
CSS0048872 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000465 8.3e-08 60.5 64 48.4
COL.COLO4_12753 Corchorus olitorius HOM05D000167 ORTHO05D000465 8.3e-08 60.5 51 60.8
Duzib138G1258 Durio zibethinus HOM05D000167 ORTHO05D000465 8.3e-08 60.5 54 59.3
Glyma.16G033251 Glycine max HOM05D000167 ORTHO05D000465 8.3e-08 60.5 69 42.0
Prupe.2G175000 Prunus persica HOM05D000167 ORTHO05D000465 8.3e-08 60.5 66 50.0
Actinidia10048 Actinidia chinensis HOM05D000167 ORTHO05D000465 1.1e-07 60.1 66 43.9
Gohir.D12G110900 Gossypium hirsutum HOM05D000167 ORTHO05D000465 1.1e-07 60.1 67 47.8
Gorai.008G120300 Gossypium raimondii HOM05D000167 ORTHO05D000465 1.1e-07 60.1 67 47.8
Manes.07G041600 Manihot esculenta HOM05D000167 ORTHO05D000465 1.1e-07 60.1 70 47.1
arahy.Tifrunner.gnm1.ann1.Q8XZQ6 Arachis hypogaea HOM05D000167 ORTHO05D000465 1.4e-07 59.7 70 44.3
arahy.Tifrunner.gnm1.ann1.R13R58 Arachis hypogaea HOM05D000167 ORTHO05D000465 1.4e-07 59.7 70 44.3
arahy.Tifrunner.gnm1.ann1.ZUE09J Arachis hypogaea HOM05D000167 ORTHO05D000465 1.4e-07 59.7 70 44.3
Cc00_g17850 Coffea canephora HOM05D000167 ORTHO05D000465 1.4e-07 59.7 73 45.2
MD01G1068500 Malus domestica HOM05D000167 ORTHO05D000465 1.4e-07 59.7 69 47.8
Nitab4.5_0009820g0030 Nicotiana tabacum HOM05D000167 ORTHO05D000465 1.4e-07 59.7 73 45.2
QL05p016916 Quercus lobata HOM05D000167 ORTHO05D000465 1.4e-07 59.7 68 48.5
arahy.Tifrunner.gnm1.ann1.2BG85J Arachis hypogaea HOM05D000167 ORTHO05D000465 2.4e-07 58.9 68 45.6
arahy.Tifrunner.gnm1.ann1.4H9MXG Arachis hypogaea HOM05D000167 ORTHO05D000465 2.4e-07 58.9 70 44.3
arahy.Tifrunner.gnm1.ann1.J0SET5 Arachis hypogaea HOM05D000167 ORTHO05D000465 4.1e-07 58.2 70 42.9
arahy.Tifrunner.gnm1.ann1.KS71V2 Arachis hypogaea HOM05D000167 ORTHO05D000465 4.1e-07 58.2 73 45.2
arahy.Tifrunner.gnm1.ann1.R7GC1L Arachis hypogaea HOM05D000167 ORTHO05D000465 4.1e-07 58.2 70 42.9
Duzib138G1294 Durio zibethinus HOM05D000167 ORTHO05D000465 4.1e-07 58.2 50 62.0
FvH4_7g15620 Fragaria vesca HOM05D000167 ORTHO05D000465 4.1e-07 58.2 69 46.4
FAN01G1611 Fragaria x ananassa HOM05D000167 ORTHO05D000465 4.1e-07 58.2 69 46.4
FAN01G2520 Fragaria x ananassa HOM05D000167 ORTHO05D000465 4.1e-07 58.2 69 46.4
FAN16G0883 Fragaria x ananassa HOM05D000167 ORTHO05D000465 4.1e-07 58.2 69 46.4
FAN21G2487 Fragaria x ananassa HOM05D000167 ORTHO05D000465 4.1e-07 58.2 69 46.4
Ciclev10019998m.g Citrus clementina HOM05D000167 ORTHO05D000465 5.4e-07 57.8 66 48.5
Medtr5g066410 Medicago truncatula HOM05D000167 ORTHO05D000465 5.4e-07 57.8 69 42.0
Haze_10507 Corylus avellana HOM05D000167 ORTHO05D000465 7.0e-07 57.4 70 42.9
RcHm_v2.0_Chr1g0357071 Rosa chinensis HOM05D000167 ORTHO05D000465 7.0e-07 57.4 68 45.6
SGA_v2.0_scaffold4G02291 Striga asiatica HOM05D000167 ORTHO05D000465 7.0e-07 57.4 54 57.4
Haze_10504 Corylus avellana HOM05D000167 ORTHO05D000465 9.2e-07 57.0 70 42.9
FvH4_7g15600 Fragaria vesca HOM05D000167 ORTHO05D000465 9.2e-07 57.0 83 42.2
FAN01G1224 Fragaria x ananassa HOM05D000167 ORTHO05D000465 9.2e-07 57.0 88 40.9
FAN06G0776 Fragaria x ananassa HOM05D000167 ORTHO05D000465 9.2e-07 57.0 83 42.2
FAN06G3505 Fragaria x ananassa HOM05D000167 ORTHO05D000465 9.2e-07 57.0 83 42.2
Glyma.01G059450 Glycine max HOM05D000167 ORTHO05D000465 9.2e-07 57.0 69 42.0
Glyma.07G067200 Glycine max HOM05D000167 ORTHO05D000465 9.2e-07 57.0 69 42.0
Manes.01G253800 Manihot esculenta HOM05D000167 ORTHO05D000465 9.2e-07 57.0 68 42.6
Medtr8g007565 Medicago truncatula HOM05D000167 ORTHO05D000465 9.2e-07 57.0 69 42.0
Medtr8g007650 Medicago truncatula HOM05D000167 ORTHO05D000465 9.2e-07 57.0 69 42.0
PGR004G0776 Punica granatum HOM05D000167 ORTHO05D000465 9.2e-07 57.0 83 42.2
Cfa005747 Carpinus fangiana HOM05D000167 ORTHO05D000465 1.2e-06 56.6 70 42.9
FvH4_3g05830 Fragaria vesca HOM05D000167 ORTHO05D000465 1.2e-06 56.6 69 44.9
FAN11G3200 Fragaria x ananassa HOM05D000167 ORTHO05D000465 1.2e-06 56.6 69 44.9
SalBow3G1463 Salvia bowleyana HOM05D000167 ORTHO05D000465 1.2e-06 56.6 54 53.7
arahy.Tifrunner.gnm1.ann1.5EGK5L Arachis hypogaea HOM05D000167 ORTHO05D000465 1.6e-06 56.2 68 44.1
Dinv24145 Davidia involucrata HOM05D000167 ORTHO05D000465 1.6e-06 56.2 69 43.5
MD01G1068700 Malus domestica HOM05D000167 ORTHO05D000465 1.6e-06 56.2 63 49.2
PSO384G3376 Papaver somniferum HOM05D000167 ORTHO05D000465 1.6e-06 56.2 72 43.1
Hma1.2p1_1093F.1_g256290 Hydrangea macrophylla HOM05D000167 ORTHO05D000465 2.0e-06 55.8 69 46.4
SalBow3G3153 Salvia bowleyana HOM05D000167 ORTHO05D000465 2.0e-06 55.8 53 52.8
VMungo0331G1469 Vigna mungo HOM05D000167 ORTHO05D000465 2.0e-06 55.8 69 39.1
Haze_10508 Corylus avellana HOM05D001183 ORTHO05D009082 2.7e-06 55.5 70 42.9
MD01G1068800 Malus domestica HOM05D000167 ORTHO05D000465 2.7e-06 55.5 66 43.9
PSO135G0984 Papaver somniferum HOM05D000167 ORTHO05D000465 2.7e-06 55.5 59 50.8
PGR004G2062 Punica granatum HOM05D000167 ORTHO05D000465 2.7e-06 55.5 66 43.9
SalBow3G1968 Salvia bowleyana HOM05D000167 ORTHO05D000465 2.7e-06 55.5 51 54.9
SGA_v2.0_scaffold27G11685 Striga asiatica HOM05D000167 ORTHO05D000465 2.7e-06 55.5 54 51.9
SGA_v2.0_scaffold27G11689 Striga asiatica HOM05D000167 ORTHO05D000465 2.7e-06 55.5 54 50.0
arahy.Tifrunner.gnm1.ann1.MD2VAR Arachis hypogaea HOM05D000167 ORTHO05D000465 3.5e-06 55.1 73 42.5
MD03G1019100 Malus domestica HOM05D000167 ORTHO05D000465 3.5e-06 55.1 68 45.6
PGR004G2681 Punica granatum HOM05D000167 ORTHO05D000465 3.5e-06 55.1 83 41.0
PGSC0003DMG400000059 Solanum tuberosum HOM05D000167 ORTHO05D000465 3.5e-06 55.1 67 46.3
Lsat_1_v5_gn_7_82740 Lactuca sativa HOM05D000167 ORTHO05D000465 5.9e-06 54.3 70 41.4
MD00G1112100 Malus domestica HOM05D000167 ORTHO05D000465 5.9e-06 54.3 66 45.5
FAN10G3532 Fragaria x ananassa HOM05D000167 ORTHO05D000465 7.8e-06 53.9 88 39.8
Glyma.07G067266 Glycine max HOM05D000167 ORTHO05D000465 7.8e-06 53.9 69 40.6
Glyma.07G067332 Glycine max HOM05D000167 ORTHO05D000465 7.8e-06 53.9 69 40.6


User provided reference genes

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