Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 6.8e-29 129.8 58 100.0
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 6.8e-21 103.2 56 85.7
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 2.9e-19 97.8 61 77.0
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 3.7e-19 97.4 58 77.6
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 9.2e-18 92.8 61 72.1
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 1.2e-17 92.4 58 79.3
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 1.6e-17 92.0 61 72.1
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 2.0e-17 91.7 58 75.9
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 2.7e-17 91.3 60 73.3
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 3.5e-17 90.9 52 76.9
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 4.6e-17 90.5 60 73.3
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 6.0e-17 90.1 56 75.0
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 1.3e-16 89.0 60 75.0
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 2.3e-16 88.2 58 75.9
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 2.3e-16 88.2 58 75.9
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 6.6e-16 86.7 58 69.0
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 6.6e-16 86.7 56 73.2
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 6.6e-16 86.7 60 70.0
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 1.1e-15 85.9 60 73.3
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 1.5e-15 85.5 59 72.9
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 2.5e-15 84.7 56 69.6
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 4.3e-15 84.0 60 73.3
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 4.3e-15 84.0 60 73.3
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 9.5e-15 82.8 59 69.5
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 1.6e-14 82.0 59 66.1
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 2.8e-14 81.3 56 66.1
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 3.6e-14 80.9 63 58.7
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 3.6e-14 80.9 57 70.2
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 6.2e-14 80.1 56 69.6
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 3.1e-13 77.8 52 67.3
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 5.2e-13 77.0 63 63.5
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 5.2e-13 77.0 46 78.3
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 1.5e-12 75.5 62 59.7
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 1.7e-11 72.0 51 64.7
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 4.9e-11 70.5 43 72.1
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 8.3e-11 69.7 64 56.2
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 2.4e-10 68.2 61 59.0
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 4.1e-10 67.4 66 57.6
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 7.1e-10 66.6 53 64.2
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 7.1e-10 66.6 53 64.2
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 7.1e-10 66.6 53 64.2
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 9.2e-10 66.2 60 55.0
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 1.6e-09 65.5 56 53.6
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 2.7e-09 64.7 66 50.0
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 3.5e-09 64.3 54 61.1
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 6.0e-09 63.5 56 57.1
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 6.0e-09 63.5 35 65.7
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 1.0e-08 62.8 58 53.4
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 1.0e-08 62.8 60 51.7
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 1.7e-08 62.0 71 49.3
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 3.9e-08 60.8 28 85.7
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 5.1e-08 60.5 58 55.2
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 5.1e-08 60.5 58 55.2
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 5.1e-08 60.5 59 55.9
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 1.9e-07 58.5 53 56.6
BolC2t06131H Brassica oleracea HOM05D008152 ORTHO05D010231 2.5e-07 58.2 57 50.9
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 4.3e-07 57.4 29 79.3
ClCG05G020750 Citrullus lanatus HOM05D008152 ORTHO05D010231 9.5e-07 56.2 44 52.3
Sed0007854 Sechium edule HOM05D008152 ORTHO05D010231 1.2e-06 55.8 58 50.0
Thecc.10G170800 Theobroma cacao HOM05D018277 ORTHO05D020787 2.1e-06 55.1 38 60.5
ATR0721G068 Amborella trichopoda HOM05D008152 ORTHO05D010231 3.6e-06 54.3 50 58.0
Aqoxy2G00309 Aquilegia oxysepala HOM05D058061 ORTHO05D010231 4.7e-06 53.9 50 58.0
Peaxi162Scf00130g01320 Petunia axillaris HOM05D008152 ORTHO05D010231 8.1e-06 53.1 47 61.7


User provided reference genes

Program Settings