Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 3.2e-234 814.7 402 100.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 4.2e-226 787.7 402 95.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 7.1e-226 786.9 402 95.5
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.1e-225 785.4 402 95.5
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 4.6e-225 784.3 402 94.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 7.8e-225 783.5 402 95.5
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.8e-225 783.5 402 93.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.0e-224 783.1 402 93.8
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.3e-224 782.7 402 94.5
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.0e-224 781.6 402 95.0
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.0e-224 781.6 402 93.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.9e-224 781.2 402 94.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.9e-224 781.2 402 94.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 5.1e-224 780.8 402 94.5
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 5.1e-224 780.8 402 93.5
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 5.1e-224 780.8 402 94.8
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 5.1e-224 780.8 402 93.5
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 8.7e-224 780.0 402 94.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-223 779.6 402 93.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-223 779.6 402 93.8
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.9e-223 778.9 402 93.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.5e-223 778.5 402 94.0
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 2.5e-223 778.5 402 93.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.5e-223 778.5 402 94.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.3e-223 778.1 402 94.0
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 3.3e-223 778.1 401 94.0
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 4.3e-223 777.7 402 93.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.6e-223 777.3 402 93.5
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 2.1e-222 775.4 402 92.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 6.2e-222 773.9 402 93.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.1e-221 773.1 402 93.3
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.4e-221 771.9 402 92.5
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 2.4e-221 771.9 402 93.3
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.4e-221 771.9 402 93.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 5.3e-221 770.8 402 93.0
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 91.8
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 93.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 93.0
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.5e-220 769.2 402 92.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 91.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.3
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 5.8e-220 767.3 402 91.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.5
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.3
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 92.0
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 91.3
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 91.5
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 2.9e-219 765.0 402 92.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 3.8e-219 764.6 402 93.0
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.5
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 90.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 92.8
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 92.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 92.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 92.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 92.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 91.5
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 91.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 91.3
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.5
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.3
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 91.3
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.7e-216 755.7 411 90.3
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 91.0
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 91.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.0
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 5.1e-216 754.2 416 88.5
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.3
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 91.3
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.5e-215 752.7 416 88.2
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 89.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 3.3e-215 751.5 402 90.0
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 7.4e-215 750.4 417 88.5
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 90.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 90.0
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 90.3
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.8
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.1
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 89.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 4.5e-212 741.1 429 85.3
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 87.8
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.6
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 89.1
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 89.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 2.2e-211 738.8 397 89.4
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.6
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 89.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.8e-211 738.0 438 83.6
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 90.3
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 3.2e-210 734.9 419 87.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.1
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.1
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.1
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 88.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.8
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.3
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 8.7e-208 726.9 401 87.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.1e-207 726.5 441 81.9
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.4e-205 718.8 400 86.0
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 86.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 84.8
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.0e-203 713.4 402 87.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 4.2e-202 708.0 375 91.5
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 7.9e-201 703.7 402 84.6
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.7e-198 694.9 402 85.6
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 5.9e-196 687.6 402 83.3
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.4e-194 682.9 357 91.0
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 5.5e-194 681.0 402 81.3
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.2e-193 679.9 402 81.6
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.0e-192 676.8 402 82.1
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 5.1e-192 674.5 361 90.9
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 8.2e-190 667.2 360 88.9
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.1e-185 652.5 402 80.6
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 4.3e-183 644.8 334 94.0
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 5.3e-181 637.9 340 90.9
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.9e-179 632.1 401 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 6.1e-177 624.4 402 73.4
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.9e-176 621.7 402 73.6
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 4.4e-175 618.2 402 77.9
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.7e-174 616.3 402 72.4
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.2e-172 610.1 403 71.5
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.7e-172 607.4 403 71.5
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.8e-165 586.3 402 70.1
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.8e-163 578.6 401 68.1
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.2e-158 562.8 403 67.2
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.2e-155 552.7 289 92.7
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 4.5e-148 528.5 403 69.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 2.3e-147 526.2 419 66.8
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 2.7e-140 502.7 402 66.2
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.2e-129 467.2 259 86.1
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 3.1e-120 436.0 394 53.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.9e-115 419.1 395 53.9
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 3.9e-115 419.1 276 76.8
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 4.3e-106 389.0 219 87.2
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 7.3e-106 388.3 219 86.8
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 1.6e-105 387.1 219 85.8
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.4e-104 383.3 229 82.1
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.0e-83 314.7 300 55.0
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.3e-81 307.8 167 88.6
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.8e-80 303.9 160 90.0
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.2e-57 227.3 116 94.8
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 7.5e-34 149.1 86 83.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.6e-31 141.4 351 29.3
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 7.3e-29 132.5 351 26.2
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.7e-17 94.7 47 91.5
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 6.6e-14 82.8 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.5e-13 80.9 72 59.7
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-12 76.6 316 23.7
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.9e-08 64.7 355 22.8


User provided reference genes

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