Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.1e-126 455.7 227 100.0
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.0e-121 439.1 228 96.5
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 6.0e-113 411.0 227 91.2
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 2.3e-112 409.1 226 90.3
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.6e-110 402.9 232 90.1
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 3.6e-110 401.7 227 89.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.1e-109 398.7 216 93.1
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 4.0e-109 398.3 228 88.6
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.0e-108 396.0 232 88.8
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.7e-107 392.9 231 87.9
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.7e-107 392.9 226 88.1
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.9e-106 389.4 228 87.3
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-106 389.0 232 87.1
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 3.2e-106 388.7 232 87.1
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 9.2e-106 387.1 226 86.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.7e-105 385.6 230 87.0
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 7.8e-105 384.0 217 89.4
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.7e-104 382.9 227 85.5
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.3e-104 382.5 216 89.4
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.9e-104 381.7 226 85.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 3.9e-104 381.7 216 89.4
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 5.1e-104 381.3 228 84.6
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.2e-102 376.7 217 88.0
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.1e-102 375.9 227 86.3
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 6.8e-101 370.9 225 85.3
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 7.6e-100 367.5 216 85.6
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.8e-99 365.2 232 82.8
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.8e-99 365.2 232 82.8
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 3.8e-99 365.2 232 82.8
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.8e-99 365.2 232 82.8
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 2.4e-98 362.5 213 89.2
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 2.4e-98 362.5 213 89.2
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 2.4e-98 362.5 213 89.2
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 9.3e-98 360.5 224 84.8
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.6e-97 359.8 213 88.7
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 3.3e-95 352.1 227 82.8
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.3e-94 350.1 229 81.2
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.1e-93 347.1 189 93.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-91 340.1 217 81.1
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.9e-91 338.2 232 78.4
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 8.4e-91 337.4 210 84.8
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 2.1e-89 332.8 227 78.9
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.3e-88 330.1 188 89.4
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.3e-88 330.1 209 81.3
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.3e-88 330.1 209 81.3
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.3e-88 330.1 209 81.3
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.3e-88 330.1 209 81.3
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.3e-88 330.1 209 81.3
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.3e-88 330.1 209 81.3
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 3.0e-88 328.9 193 90.2
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-87 327.0 194 87.6
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 9.6e-87 323.9 198 83.3
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.1e-86 322.8 215 79.1
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.8e-86 322.4 193 88.1
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-84 317.0 204 81.4
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-84 316.2 198 82.3
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.6e-84 314.3 226 74.3
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.2e-83 312.8 193 85.5
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.2e-83 312.8 193 85.5
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.2e-83 312.8 193 85.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.2e-83 312.8 193 85.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.2e-83 312.8 193 85.5
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.9e-82 309.7 190 86.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.2e-82 308.5 187 84.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.6e-81 306.6 189 86.2
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-81 306.2 178 87.6
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-79 298.9 226 71.2
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 3.1e-77 292.4 232 71.1
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.5e-71 272.7 157 88.5
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 3.3e-71 272.3 153 88.9
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-62 241.9 151 83.4
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.1e-61 240.7 146 84.9
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.2e-60 237.3 191 69.6
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.9e-58 229.9 123 88.6
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-53 213.8 122 82.0
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.3e-53 211.8 178 65.7
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 4.2e-50 202.2 111 86.5
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.1e-48 195.3 112 83.9
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 3.3e-47 192.6 152 69.1
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 7.4e-47 191.4 111 91.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.2e-42 176.0 189 57.1
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 3.2e-42 176.0 189 57.1
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 8.0e-41 171.4 162 61.1
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 6.3e-38 161.8 95 83.2
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 8.2e-38 161.4 100 87.0
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 3.5e-36 156.0 87 87.4
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.5e-36 156.0 92 83.7
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.7e-36 154.8 128 68.8
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.9e-34 150.2 150 61.3
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-33 146.4 134 64.2
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-28 130.2 70 85.7
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 2.6e-23 113.2 75 70.7
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 7.5e-23 111.7 104 67.3
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.5e-23 111.7 59 86.4
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-19 100.1 74 66.2
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 2.5e-18 96.7 56 87.5
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 9.5e-18 94.7 79 63.3
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-17 93.2 81 60.5
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 8.0e-17 91.7 100 56.0
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 5.7e-15 85.5 52 80.8
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-13 80.1 81 59.3
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 2.0e-12 77.0 70 65.7
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 6.2e-09 65.5 40 82.5
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.0e-09 65.1 37 86.5
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 1.4e-08 64.3 38 84.2
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 4.0e-08 62.8 32 87.5
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 4.0e-08 62.8 32 87.5
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 4.0e-08 62.8 32 87.5
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 6.8e-08 62.0 42 78.6
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 4.9e-06 55.8 39 76.9


User provided reference genes

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