Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.8e-223 778.5 445 100.0
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.1e-49 201.8 329 40.1
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 1.1e-46 191.8 318 40.9
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.5e-46 189.5 271 46.5
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 4.7e-45 186.4 306 41.2
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 5.2e-44 183.0 322 38.2
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 7.5e-43 179.1 241 43.6
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.7e-42 177.9 409 34.5
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 2.2e-42 177.6 255 42.4
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 2.8e-42 177.2 316 39.9
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 8.3e-42 175.6 180 52.2
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 2.4e-41 174.1 317 40.1
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 2.4e-41 174.1 414 36.2
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 9.1e-41 172.2 253 42.3
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 4.5e-40 169.9 323 36.8
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 4.5e-40 169.9 323 36.8
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 4.5e-40 169.9 323 36.8
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 5.9e-40 169.5 248 42.3
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.3e-39 168.3 426 31.9
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 1.3e-39 168.3 278 38.5
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 1.9e-38 164.5 302 39.1
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 2.5e-38 164.1 449 32.3
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 4.7e-37 159.8 312 35.9
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.4e-36 158.3 310 34.8
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 3.0e-36 157.1 261 40.2
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.5e-35 154.8 470 31.1
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 1.5e-35 154.8 434 32.0
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 9.8e-35 152.1 301 33.6
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 9.8e-35 152.1 251 41.4
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.7e-34 151.4 199 44.2
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.9e-34 150.6 310 36.8
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.7e-34 150.2 270 40.4
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 5.4e-33 146.4 322 36.3
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.6e-32 144.8 320 33.1
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.7e-32 144.1 302 35.8
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.7e-32 144.1 311 36.0
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 3.5e-32 143.7 447 30.9
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.5e-32 143.7 311 36.0
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 7.8e-32 142.5 318 35.2
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 1.0e-31 142.1 438 32.6
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 1.7e-31 141.4 300 34.7
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 6.6e-31 139.4 236 37.3
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 6.6e-31 139.4 456 30.7
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 8.6e-31 139.0 404 34.4
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.1e-30 138.7 299 35.1
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 1.5e-30 138.3 202 42.6
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.5e-30 138.3 205 42.9
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 4.3e-30 136.7 177 44.1
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 1.2e-29 135.2 234 37.6
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.2e-29 135.2 387 33.9
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 1.6e-29 134.8 421 30.4
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 2.8e-29 134.0 232 40.9
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.2e-29 132.9 387 33.6
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 8.0e-29 132.5 421 32.3
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.8e-28 131.3 177 44.1
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 3.1e-28 130.6 178 42.1
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.0e-28 130.2 295 30.2
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 8.9e-28 129.0 226 38.9
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 8.9e-28 129.0 312 30.4
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 2.0e-27 127.9 180 40.0
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 5.8e-27 126.3 289 33.2
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.3e-26 125.2 302 33.4
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 2.2e-26 124.4 177 40.1
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 2.9e-26 124.0 180 38.3
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 4.9e-26 123.2 178 40.4
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 6.4e-26 122.9 191 39.8
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 1.4e-25 121.7 176 39.2
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 1.4e-25 121.7 235 37.4
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 2.4e-25 120.9 461 27.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 4.1e-25 120.2 258 34.5
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.4e-25 119.8 294 34.0
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 7.0e-25 119.4 176 40.3
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 7.0e-25 119.4 296 31.4
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 1.6e-24 118.2 174 40.2
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 3.5e-24 117.1 450 27.6
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 6.0e-24 116.3 228 32.9
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 7.8e-24 115.9 276 34.1
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.3e-23 115.2 298 29.2
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 1.3e-23 115.2 183 38.3
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 1.7e-23 114.8 174 39.1
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.7e-23 114.8 271 34.3
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 2.3e-23 114.4 379 32.2
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 2.3e-23 114.4 191 37.2
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 3.0e-23 114.0 176 38.6
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 3.9e-23 113.6 240 36.7
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 6.6e-23 112.8 189 37.6
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 8.6e-23 112.5 173 39.3
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 8.6e-23 112.5 173 39.3
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.1e-22 112.1 188 38.8
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.1e-22 112.1 194 35.1
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 2.5e-22 110.9 201 36.3
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 2.5e-22 110.9 325 29.2
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 3.3e-22 110.5 178 35.4
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 4.3e-22 110.2 189 37.0
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 5.6e-22 109.8 231 34.2
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.3e-22 109.4 315 33.7
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 7.3e-22 109.4 230 34.8
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 9.5e-22 109.0 202 36.1
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.2e-21 108.6 176 37.5
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 1.2e-21 108.6 281 33.1
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 2.1e-21 107.8 286 31.8
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 6.8e-20 102.8 370 28.6
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 6.8e-20 102.8 211 35.1
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 8.9e-20 102.4 451 28.2
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.2e-19 102.1 177 37.9
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 2.0e-19 101.3 283 28.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.0e-19 101.3 309 28.5
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 5.8e-19 99.8 417 28.3
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.3e-18 98.6 353 29.2
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 1.7e-18 98.2 184 38.6
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.7e-18 97.1 226 35.0
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 8.3e-18 95.9 411 32.8
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 8.3e-18 95.9 261 31.4
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.4e-17 94.4 171 35.1
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.6e-16 91.7 431 28.5
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 3.5e-16 90.5 135 43.7
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 3.6e-13 80.5 409 26.7
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 7.6e-11 72.8 255 28.2
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.4e-09 66.6 136 31.6
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.6e-08 65.1 143 31.5
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.5e-08 63.9 125 36.0
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 6.0e-08 63.2 111 41.4
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 1.0e-07 62.4 201 27.4
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.0e-07 62.4 108 38.9
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.3e-07 62.0 242 29.8
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.7e-07 61.6 144 33.3
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.3e-07 61.2 141 31.2
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.0e-07 60.8 158 33.5
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 3.0e-07 60.8 116 37.9
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 3.0e-07 60.8 241 28.6
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.9e-07 60.5 129 35.7
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.1e-07 60.1 107 34.6
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 5.1e-07 60.1 144 33.3
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 5.1e-07 60.1 136 33.8
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 6.6e-07 59.7 128 34.4
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.5e-06 58.5 134 32.8
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.5e-06 57.8 158 32.3
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.5e-06 57.8 126 32.5
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 3.3e-06 57.4 113 32.7
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 5.6e-06 56.6 129 34.9
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.6e-06 56.6 133 32.3
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 5.6e-06 56.6 111 35.1
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 7.3e-06 56.2 113 38.1
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 9.6e-06 55.8 228 27.2


User provided reference genes

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