Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 4.0e-181 637.9 304 100.0
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 8.5e-123 444.1 302 67.2
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 1.1e-122 443.7 303 69.3
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 4.2e-122 441.8 302 67.2
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 9.4e-122 440.7 302 67.5
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 1.2e-121 440.3 304 66.8
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.1e-121 439.5 304 66.4
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 3.6e-121 438.7 302 67.5
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 6.1e-121 438.0 304 67.4
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.8e-120 436.4 304 66.1
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.7e-118 429.9 304 64.8
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 2.8e-118 429.1 304 65.8
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 3.7e-118 428.7 302 65.9
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.4e-117 426.8 304 64.1
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 3.1e-117 425.6 302 65.9
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 3.5e-116 422.2 304 64.5
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 5.9e-116 421.4 302 63.6
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 5.9e-116 421.4 302 63.6
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 1.3e-115 420.2 305 65.6
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 1.7e-115 419.9 301 64.5
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 5.0e-115 418.3 307 62.2
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 8.5e-115 417.5 306 62.1
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.5e-114 416.8 303 63.7
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 4.2e-114 415.2 303 63.7
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.5e-114 414.8 303 63.4
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 5.5e-114 414.8 303 63.4
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.2e-114 414.5 303 63.7
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 9.4e-114 414.1 274 71.2
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.2e-113 413.7 303 63.4
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 1.6e-113 413.3 303 63.7
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.6e-113 413.3 274 67.9
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 4.7e-113 411.8 313 63.3
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 6.1e-113 411.4 305 61.3
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 6.1e-113 411.4 274 67.9
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 3.0e-112 409.1 304 61.8
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 5.2e-112 408.3 306 62.4
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 8.8e-112 407.5 313 62.6
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 1.2e-111 407.1 304 62.8
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.0e-111 406.4 304 62.5
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 2.0e-111 406.4 275 68.7
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.7e-111 404.8 286 64.0
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 5.7e-111 404.8 304 62.5
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 3.7e-110 402.1 304 60.5
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 3.1e-109 399.1 304 60.5
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 4.1e-109 398.7 303 63.0
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 4.1e-109 398.7 303 61.4
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.0e-108 396.4 304 60.5
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 2.7e-108 396.0 304 61.5
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 5.0e-107 391.7 305 59.0
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 8.6e-107 391.0 304 61.2
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 5.5e-106 388.3 280 64.3
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.6e-105 386.7 276 63.4
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 2.1e-105 386.3 280 64.3
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.1e-105 386.3 304 59.5
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 4.7e-105 385.2 305 59.7
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.0e-104 384.0 304 59.5
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 1.4e-104 383.6 302 59.6
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 2.3e-104 382.9 294 58.2
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 2.3e-104 382.9 294 60.2
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 4.0e-104 382.1 280 62.9
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 6.8e-104 381.3 294 60.5
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 8.9e-104 380.9 304 59.5
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.2e-103 380.6 294 59.9
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.5e-103 380.2 294 60.9
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.5e-103 380.2 274 63.5
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 2.0e-103 379.8 271 64.2
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 5.7e-103 378.3 264 68.6
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 9.8e-103 377.5 306 58.8
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 1.3e-102 377.1 305 58.7
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.7e-102 376.7 302 58.6
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 6.3e-102 374.8 273 63.0
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 6.3e-102 374.8 321 57.3
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.1e-101 374.0 294 59.2
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 1.1e-101 374.0 274 61.3
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 1.8e-101 373.2 298 59.1
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.6e-100 370.2 272 63.6
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.6e-100 370.2 279 63.1
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 2.3e-99 366.3 301 57.5
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.1e-98 364.0 293 60.4
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.5e-98 363.6 309 58.9
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 5.4e-93 345.1 285 58.2
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 3.5e-92 342.4 271 60.1
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 6.0e-92 341.7 245 62.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 7.8e-92 341.3 279 57.7
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.8e-89 332.8 301 53.5
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 4.4e-87 325.5 292 53.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.9e-82 310.1 279 53.8
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 1.9e-82 310.1 228 62.3
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 9.5e-82 307.8 295 51.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.8e-81 306.2 279 53.4
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 1.1e-80 304.3 320 50.9
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 4.0e-80 302.4 217 63.1
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.2e-79 300.8 340 47.1
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 6.4e-78 295.0 213 62.4
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 4.6e-76 288.9 240 57.5
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 3.3e-74 282.7 255 53.7
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 5.6e-74 282.0 278 50.4
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 2.1e-73 280.0 275 50.5
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 3.8e-70 269.2 180 70.6
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 4.2e-69 265.8 190 64.7
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 1.2e-68 264.2 191 66.5
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 2.3e-67 260.0 301 44.5
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 3.0e-67 259.6 315 44.4
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 1.9e-66 256.9 191 63.9
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 7.3e-66 255.0 273 47.3
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.3e-62 244.2 296 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 8.4e-62 241.5 249 46.6
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 2.3e-59 233.4 191 58.6
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 7.3e-58 228.4 192 56.8
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.0e-55 220.3 185 56.8
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 7.1e-53 211.8 208 54.8
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 9.3e-53 211.5 189 52.9
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.7e-52 209.9 282 40.8
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.1e-50 204.5 193 53.4
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.3e-50 202.6 284 39.4
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 2.4e-48 196.8 311 34.4
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 4.0e-48 196.1 319 34.2
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 4.9e-46 189.1 277 37.2
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 8.4e-46 188.3 125 68.8
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.4e-45 187.6 134 67.2
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 2.5e-42 176.8 258 37.2
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 8.2e-41 171.8 118 70.3
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.1e-40 171.4 265 36.2
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 1.8e-40 170.6 126 59.5
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 4.1e-40 169.5 220 43.2
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 8.4e-38 161.8 123 62.6
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.9e-37 160.6 120 63.3
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 7.9e-36 155.2 120 59.2
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.9e-34 150.6 164 50.0
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 5.7e-34 149.1 100 65.0
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 4.8e-33 146.0 102 60.8
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 6.5e-30 135.6 105 61.0
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 1.0e-27 128.3 120 50.8
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.0e-27 126.7 96 60.4
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 3.4e-23 113.2 179 39.1
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 4.5e-23 112.8 126 43.7
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.1e-18 98.2 83 53.0
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 5.7e-18 95.9 73 61.6
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 7.4e-18 95.5 63 71.4
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.3e-16 89.4 66 57.6
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 1.1e-13 81.6 60 65.0
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 1.9e-13 80.9 50 60.0
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 1.9e-13 80.9 92 38.0
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 4.0e-11 73.2 64 57.8
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 9.7e-10 68.6 103 38.8
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 1.7e-09 67.8 52 59.6
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 2.9e-06 57.0 43 58.1


User provided reference genes

Program Settings