Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 4.4e-130 468.0 240 100.0
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 7.5e-114 414.1 241 89.6
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.5e-87 325.5 242 71.9
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.9e-80 303.1 241 66.4
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.4e-72 276.9 239 63.6
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.6e-71 273.5 238 63.9
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.5e-71 272.3 268 57.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.7e-70 270.0 239 62.3
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.7e-70 270.0 208 66.3
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.3e-70 269.6 238 62.2
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.1e-70 268.5 243 61.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.6e-70 267.7 238 62.2
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.9e-69 266.5 204 68.1
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 2.5e-69 266.2 234 60.7
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.2e-68 263.8 242 60.3
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.6e-68 263.5 242 62.0
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.6e-68 263.5 241 59.8
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 2.1e-68 263.1 220 63.6
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 3.6e-68 262.3 246 60.2
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 4.7e-68 261.9 216 65.7
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 4.7e-68 261.9 242 58.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.1e-67 260.8 241 58.9
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.2e-66 257.3 242 57.9
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.5e-66 256.9 247 57.1
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 2.6e-66 256.1 242 57.4
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 2.6e-66 256.1 237 60.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 4.4e-66 255.4 229 59.4
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 9.9e-66 254.2 242 57.4
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.7e-65 253.4 247 60.7
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.7e-65 253.4 242 57.4
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 6.4e-65 251.5 237 59.5
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.9e-64 250.0 235 57.9
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.9e-64 250.0 242 59.9
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.4e-64 249.6 241 56.4
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 4.1e-64 248.8 226 60.2
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 5.4e-64 248.4 234 59.0
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.2e-63 247.3 292 50.0
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.6e-63 246.9 241 56.0
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 3.5e-63 245.7 243 56.8
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 4.6e-63 245.4 242 57.9
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 7.8e-63 244.6 242 58.7
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 6.6e-62 241.5 262 53.4
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 2.5e-61 239.6 243 58.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.3e-61 238.8 216 56.0
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 5.6e-61 238.4 234 54.7
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.2e-60 237.3 241 55.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.6e-60 236.9 234 53.4
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.6e-60 236.9 241 54.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.6e-60 236.9 243 54.3
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.6e-60 235.7 241 54.8
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 4.7e-60 235.3 243 54.7
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 4.7e-60 235.3 210 58.6
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 2.4e-59 233.0 221 55.7
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.1e-59 232.6 243 54.7
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 5.2e-59 231.9 206 57.8
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.9e-59 231.5 244 57.4
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.2e-58 230.7 241 54.4
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.6e-58 229.6 234 53.8
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 5.8e-58 228.4 246 53.7
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.9e-58 227.6 209 57.9
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.9e-58 227.6 209 57.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.3e-57 227.3 239 55.6
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.2e-57 226.5 236 53.4
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.2e-57 226.5 236 53.4
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.2e-57 226.5 236 53.8
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.9e-57 226.1 182 62.6
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 8.4e-57 224.6 218 56.0
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.9e-56 223.4 235 53.6
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.2e-55 220.7 245 56.3
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.6e-55 220.3 231 53.7
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 2.1e-55 219.9 246 52.4
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.6e-55 218.8 241 52.7
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 7.8e-55 218.0 203 56.2
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 7.8e-55 218.0 215 54.4
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.0e-54 217.6 275 51.3
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-53 214.2 229 52.4
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-53 213.0 230 51.7
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.5e-53 213.0 240 50.8
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.6e-53 211.8 213 53.5
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 7.3e-53 211.5 195 55.4
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 9.6e-53 211.1 205 61.0
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.3e-52 210.7 237 48.9
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.6e-52 209.1 240 52.1
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 6.2e-52 208.4 218 52.8
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.1e-51 207.6 242 50.4
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 4.0e-51 205.7 243 50.6
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 4.0e-51 205.7 233 54.5
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 9.0e-51 204.5 237 48.5
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 9.9e-50 201.1 231 49.4
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.2e-49 199.9 243 50.2
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-49 199.5 231 48.9
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 8.4e-49 198.0 206 52.9
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.4e-48 196.4 241 51.0
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.2e-47 194.1 237 48.1
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 3.5e-47 192.6 243 51.0
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.0e-46 191.0 241 47.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.3e-46 190.7 232 48.3
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 3.0e-46 189.5 172 59.3
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-45 186.8 231 47.6
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.9e-45 186.8 174 59.8
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.9e-45 186.8 243 46.5
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 4.3e-45 185.7 225 48.4
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 6.2e-44 181.8 241 45.2
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 3.4e-42 176.0 178 57.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 5.8e-42 175.3 233 45.9
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-41 173.3 230 44.8
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 2.9e-41 172.9 242 46.7
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 4.9e-41 172.2 233 43.8
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 3.2e-40 169.5 235 45.1
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 7.1e-40 168.3 203 47.3
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 9.3e-40 167.9 232 46.1
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.6e-39 167.2 233 44.6
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 3.5e-39 166.0 245 43.3
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.3e-38 164.1 242 45.9
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 5.1e-38 162.2 232 42.7
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-38 161.8 173 49.7
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 8.7e-38 161.4 231 44.2
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.5e-37 160.6 241 44.0
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.9e-37 160.2 168 51.2
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 5.6e-37 158.7 235 44.3
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 7.4e-37 158.3 121 64.5
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 9.6e-37 157.9 246 42.3
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.6e-37 157.9 229 42.4
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.8e-36 156.4 197 48.2
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.8e-35 153.7 212 41.5
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 4.0e-35 152.5 194 48.5
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 9.0e-35 151.4 236 43.6
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 6.5e-33 145.2 241 42.7
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 3.2e-32 142.9 109 63.3
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 3.2e-32 142.9 168 53.0
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.5e-31 139.4 101 74.3
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.8e-30 137.1 200 42.5
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.7e-28 129.4 198 42.9
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 3.1e-27 126.3 176 44.3
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-27 125.6 200 43.0
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 8.5e-25 118.2 240 36.7
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.9e-24 117.1 169 43.2
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.2e-23 114.4 167 45.5
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.4e-21 105.1 145 44.8
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 2.8e-20 103.2 159 41.5
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 8.2e-20 101.7 160 42.5
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.7e-15 85.9 120 39.2
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.7e-15 85.9 93 46.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.8e-14 81.6 115 43.5
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-13 80.9 93 44.1
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.3e-13 79.7 148 39.9
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 4.4e-13 79.3 159 33.3
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.7e-13 79.0 115 41.7
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.7e-12 77.4 101 42.6
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-10 69.3 93 45.2
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 4.5e-10 69.3 56 62.5
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 4.5e-10 69.3 92 43.5
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 7.7e-10 68.6 93 45.2
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.7e-10 68.6 39 87.2
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.7e-10 68.6 39 87.2
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-07 61.2 96 42.7


User provided reference genes

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