Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14553 Nelumbo nucifera HOM05D002457 ORTHO05D005750 5.1e-23 110.2 53 100.0
Nn1g05429 Nelumbo nucifera HOM05D002457 ORTHO05D005750 3.8e-10 67.4 45 71.1
Aqoxy6G00731 Aquilegia oxysepala HOM05D002457 ORTHO05D005750 8.4e-10 66.2 45 71.1
MBI02_g33236_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D005750 2.4e-09 64.7 46 65.2
TAR381G1374 Trochodendron aralioides HOM05D002457 ORTHO05D005750 5.5e-09 63.5 46 65.2
QL12p037399 Quercus lobata HOM05D002457 ORTHO05D005750 4.6e-08 60.5 45 62.2
QL12p038698 Quercus lobata HOM05D002457 ORTHO05D005750 4.6e-08 60.5 45 62.2
Haze_22295 Corylus avellana HOM05D002457 ORTHO05D005750 6.0e-08 60.1 45 62.2
Dinv44796 Davidia involucrata HOM05D002457 ORTHO05D005750 7.9e-08 59.7 44 63.6
arahy.Tifrunner.gnm1.ann1.H9D2WH Arachis hypogaea HOM05D002457 ORTHO05D005750 1.0e-07 59.3 45 57.8
Manes.18G065400 Manihot esculenta HOM05D002457 ORTHO05D005750 1.0e-07 59.3 45 55.6
GSVIVG01009071001 Vitis vinifera HOM05D002457 ORTHO05D005750 1.0e-07 59.3 45 62.2
Ciclev10000161m.g Citrus clementina HOM05D002457 ORTHO05D005750 1.3e-07 58.9 45 62.2
Cfa013661 Carpinus fangiana HOM05D002457 ORTHO05D005750 1.8e-07 58.5 46 58.7
RcHm_v2.0_Chr7g0243141 Rosa chinensis HOM05D002457 ORTHO05D005750 1.8e-07 58.5 45 57.8
Potri.002G099400 Populus trichocarpa HOM05D002457 ORTHO05D005750 2.3e-07 58.2 45 57.8
Glyma.06G101600 Glycine max HOM05D002457 ORTHO05D005750 3.0e-07 57.8 45 57.8
arahy.Tifrunner.gnm1.ann1.Y876JP Arachis hypogaea HOM05D002457 ORTHO05D005750 3.9e-07 57.4 45 55.6
Cpa.g.sc36.164 Carica papaya HOM05D002457 ORTHO05D005750 3.9e-07 57.4 45 60.0
CiPaw.07G177900 Carya illinoinensis HOM05D002457 ORTHO05D005750 3.9e-07 57.4 45 60.0
PSO447G0244 Papaver somniferum HOM05D002457 ORTHO05D005750 3.9e-07 57.4 45 60.0
PSO210G3704 Papaver somniferum HOM05D002457 ORTHO05D005750 5.1e-07 57.0 43 60.5
RcHm_v2.0_Chr7g0243351 Rosa chinensis HOM05D002457 ORTHO05D005750 5.1e-07 57.0 45 60.0
Sp5g33400 Schrenkiella parvula HOM05D002457 ORTHO05D005750 5.1e-07 57.0 45 55.6
Carub.0002s2518 Capsella rubella HOM05D002457 ORTHO05D005750 8.7e-07 56.2 45 55.6
THA.LOC104810709 Tarenaya hassleriana HOM05D002457 ORTHO05D005750 8.7e-07 56.2 45 53.3
Thhalv10018079m.g Eutrema salsugineum HOM05D002457 ORTHO05D005750 1.1e-06 55.8 45 53.3
Nitab4.5_0000786g0170 Nicotiana tabacum HOM05D002457 ORTHO05D005750 1.1e-06 55.8 45 57.8
ATR0782G122 Amborella trichopoda HOM05D002457 ORTHO05D005750 1.5e-06 55.5 45 60.0
Prupe.1G521300 Prunus persica HOM05D002457 ORTHO05D005750 1.5e-06 55.5 45 57.8
COL.COLO4_12026 Corchorus olitorius HOM05D002457 ORTHO05D005750 1.9e-06 55.1 44 61.4
FvH4_5g36800 Fragaria vesca HOM05D002457 ORTHO05D005750 1.9e-06 55.1 45 55.6
FAN08G0375 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.9e-06 55.1 45 55.6
FAN18G1557 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.9e-06 55.1 45 55.6
MD15G1372700 Malus domestica HOM05D002457 ORTHO05D005750 1.9e-06 55.1 45 57.8
AT1G78280 Arabidopsis thaliana HOM05D002457 ORTHO05D005750 2.5e-06 54.7 45 53.3
Sabra02G0078000 Salix brachista HOM05D002457 ORTHO05D005750 2.5e-06 54.7 45 51.1
CANSAT54G2291 Cannabis sativa HOM05D002457 ORTHO05D005750 3.3e-06 54.3 45 57.8
FAN04G0153 Fragaria x ananassa HOM05D002457 ORTHO05D005750 3.3e-06 54.3 45 53.3
MD08G1186800 Malus domestica HOM05D002457 ORTHO05D005750 3.3e-06 54.3 45 57.8
Rhsim06G0078900 Rhododendron simsii HOM05D002457 ORTHO05D005750 3.3e-06 54.3 45 57.8
Thecc.08G103800 Theobroma cacao HOM05D002457 ORTHO05D005750 3.3e-06 54.3 44 59.1
vmacro21245 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 3.3e-06 54.3 45 57.8
vmacro21299 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 3.3e-06 54.3 45 57.8
CSS0003030 Camellia sinensis var. sinensis HOM05D002457 ORTHO05D005750 4.3e-06 53.9 45 60.0
FAN13G1549 Fragaria x ananassa HOM05D002457 ORTHO05D005750 4.3e-06 53.9 45 53.3
TWI12G1349 Tripterygium wilfordii HOM05D002457 ORTHO05D005750 4.3e-06 53.9 45 53.3
MSTRG.22163 Avicennia marina HOM05D002457 ORTHO05D005750 5.6e-06 53.5 44 56.8
BcaB03g16003 Brassica carinata HOM05D002457 ORTHO05D005750 5.6e-06 53.5 44 52.3
CARHR071750 Cardamine hirsuta HOM05D002457 ORTHO05D005750 5.6e-06 53.5 45 51.1
Phvul.009G032400 Phaseolus vulgaris HOM05D002457 ORTHO05D005750 5.6e-06 53.5 45 55.6
Atru.chr13.1133 Acer truncatum HOM05D002457 ORTHO05D005750 7.4e-06 53.1 45 57.8
BcaB05g25129 Brassica carinata HOM05D002457 ORTHO05D005750 7.4e-06 53.1 45 51.1
Ca_16043_v3 Cicer arietinum L. HOM05D002457 ORTHO05D005750 7.4e-06 53.1 45 51.1
AUR62018953 Chenopodium quinoa HOM05D002457 ORTHO05D005750 9.6e-06 52.8 41 58.5
Migut.N02884 Erythranthe guttata HOM05D002457 ORTHO05D005750 9.6e-06 52.8 44 59.1
Lj4C97T15 Lonicera japonica HOM05D002457 ORTHO05D005750 9.6e-06 52.8 44 56.8


User provided reference genes

Program Settings