Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 1.1e-62 243.0 120 100.0
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-26 122.9 63 93.7
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-25 119.8 87 69.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.5e-25 117.9 58 93.1
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-24 116.3 87 67.8
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.0e-24 114.0 86 66.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-23 112.8 87 65.5
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.8e-23 112.8 58 89.7
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.6e-22 109.0 58 84.5
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.3e-22 108.6 63 77.8
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 4.4e-22 108.2 63 79.4
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 5.7e-22 107.8 63 77.8
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 9.7e-22 107.1 63 76.2
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 2.2e-21 105.9 58 81.0
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 2.8e-21 105.5 63 76.2
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.8e-21 105.5 58 79.3
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 3.7e-21 105.1 78 65.4
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.7e-21 105.1 60 80.0
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 6.3e-21 104.4 63 73.0
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 8.3e-21 104.0 58 81.0
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 8.3e-21 104.0 58 81.0
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 8.3e-21 104.0 58 77.6
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.1e-20 103.6 58 81.0
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.4e-20 102.4 63 73.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.4e-20 102.4 63 73.0
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.4e-20 102.4 63 73.0
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 3.1e-20 102.1 63 73.0
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 3.1e-20 102.1 63 73.0
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 3.1e-20 102.1 63 71.4
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 3.1e-20 102.1 58 77.6
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 3.1e-20 102.1 82 65.9
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 4.1e-20 101.7 58 81.0
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 5.3e-20 101.3 58 81.0
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.3e-20 101.3 58 79.3
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.3e-20 101.3 58 79.3
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 5.3e-20 101.3 63 74.6
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 5.3e-20 101.3 58 79.3
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 7.0e-20 100.9 58 79.3
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.6e-19 99.8 57 71.9
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 1.6e-19 99.8 58 75.9
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.6e-19 99.8 58 79.3
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 2.0e-19 99.4 58 70.7
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 2.7e-19 99.0 63 69.8
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 2.7e-19 99.0 58 77.6
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 3.5e-19 98.6 58 77.6
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 3.5e-19 98.6 58 70.7
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 4.5e-19 98.2 94 55.3
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 4.5e-19 98.2 58 77.6
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 5.9e-19 97.8 58 75.9
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 7.7e-19 97.4 58 69.0
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 7.7e-19 97.4 60 70.0
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 7.7e-19 97.4 60 71.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 7.7e-19 97.4 58 69.0
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 7.7e-19 97.4 58 74.1
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.0e-18 97.1 63 66.7
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.0e-18 97.1 82 59.8
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.0e-18 97.1 83 60.2
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.3e-18 96.7 63 66.7
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.2e-18 95.9 60 70.0
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 2.2e-18 95.9 82 61.0
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 2.2e-18 95.9 58 67.2
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 2.2e-18 95.9 58 72.4
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 2.9e-18 95.5 58 75.9
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 3.8e-18 95.1 58 70.7
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 5.0e-18 94.7 58 72.4
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 5.0e-18 94.7 58 72.4
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 6.5e-18 94.4 82 59.8
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 8.5e-18 94.0 58 70.7
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.1e-17 93.6 58 74.1
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.1e-17 93.6 58 74.1
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 1.1e-17 93.6 64 67.2
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.5e-17 93.2 58 74.1
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 1.9e-17 92.8 58 67.2
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 3.2e-17 92.0 82 58.5
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 3.2e-17 92.0 82 54.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 4.2e-17 91.7 58 69.0
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 7.2e-17 90.9 58 67.2
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 9.4e-17 90.5 58 74.1
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.2e-16 90.1 58 70.7
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.2e-16 90.1 58 69.0
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.1e-16 89.4 58 70.7
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.1e-16 89.4 58 70.7
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 2.7e-16 89.0 58 72.4
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.7e-16 89.0 58 67.2
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 3.6e-16 88.6 76 57.9
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.7e-16 88.2 48 83.3
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.7e-16 88.2 48 83.3
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 4.7e-16 88.2 58 65.5
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.4e-15 86.7 51 76.5
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.8e-15 86.3 63 61.9
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.8e-15 86.3 64 62.5
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 2.3e-15 85.9 57 63.2
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 4.0e-15 85.1 64 60.9
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 5.2e-15 84.7 64 60.9
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 6.8e-15 84.3 63 65.1
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 2.0e-14 82.8 57 64.9
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-14 82.4 41 90.2
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.6e-14 82.4 58 60.3
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 7.5e-14 80.9 49 69.4
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.7e-13 79.7 49 73.5
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 3.7e-13 78.6 47 70.2
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 8.3e-13 77.4 41 80.5
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.1e-12 77.0 57 57.9
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 2.4e-12 75.9 107 40.2
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 2.7e-11 72.4 42 71.4
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.7e-11 72.4 42 71.4
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 7.7e-11 70.9 42 69.0
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 1.7e-10 69.7 46 63.0
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 2.9e-10 68.9 41 68.3
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.9e-10 68.9 41 68.3
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 2.9e-10 68.9 41 68.3
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.8e-10 68.6 40 72.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 2.5e-09 65.9 41 65.9


User provided reference genes

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