Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 3.8e-96 354.8 172 100.0
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.5e-79 297.0 169 86.4
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.2e-78 296.6 170 85.9
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.8e-77 292.7 171 82.5
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 6.4e-75 284.3 151 87.4
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.0e-72 276.9 153 86.3
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.1e-72 274.6 163 81.6
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 8.6e-72 273.9 151 87.4
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.3e-71 271.9 153 85.0
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.6e-71 271.2 147 85.7
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 7.3e-71 270.8 147 85.0
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 7.3e-71 270.8 168 78.0
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 7.3e-71 270.8 148 85.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.2e-70 270.0 164 79.9
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.8e-70 268.9 163 80.4
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.6e-70 268.5 147 83.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 3.6e-70 268.5 147 83.7
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 4.7e-70 268.1 165 79.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.7e-70 268.1 147 85.0
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 8.1e-70 267.3 165 78.8
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 8.1e-70 267.3 161 80.1
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.1e-69 266.9 164 79.3
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.8e-69 266.2 166 78.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.8e-69 266.2 166 78.9
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.8e-69 266.2 146 83.6
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.3e-69 265.8 147 83.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.1e-69 265.4 151 83.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 4.0e-69 265.0 162 79.0
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 4.0e-69 265.0 167 76.0
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 4.0e-69 265.0 145 84.1
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 4.0e-69 265.0 146 84.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.2e-69 264.6 169 76.9
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 5.2e-69 264.6 147 81.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 6.8e-69 264.2 145 84.1
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 6.8e-69 264.2 163 77.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 8.9e-69 263.8 145 82.8
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 8.9e-69 263.8 147 81.6
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 8.9e-69 263.8 164 78.0
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-68 263.5 146 82.2
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.2e-68 263.5 146 82.2
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.2e-68 263.5 148 82.4
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-68 263.1 164 79.3
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.5e-68 263.1 146 84.2
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.6e-68 262.3 164 78.7
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 4.4e-68 261.5 148 81.8
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 4.4e-68 261.5 148 81.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 5.8e-68 261.2 153 81.0
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 5.8e-68 261.2 153 77.8
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 7.6e-68 260.8 163 77.3
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 9.9e-68 260.4 164 78.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 9.9e-68 260.4 164 78.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 9.9e-68 260.4 169 76.9
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.3e-67 260.0 146 83.6
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.3e-67 260.0 148 81.8
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-67 259.6 146 84.2
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.9e-67 258.8 146 82.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.8e-67 258.5 163 75.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.8e-67 258.5 163 75.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.8e-67 258.5 146 83.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 6.4e-67 257.7 146 82.2
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 6.4e-67 257.7 148 81.1
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 8.4e-67 257.3 148 81.8
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 8.4e-67 257.3 159 76.1
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 8.4e-67 257.3 151 82.1
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.1e-66 256.9 146 81.5
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-66 256.5 164 77.4
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 2.4e-66 255.8 159 78.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 2.4e-66 255.8 147 80.3
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.2e-66 255.4 149 77.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 3.2e-66 255.4 167 71.9
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.1e-66 255.0 148 79.1
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 9.2e-66 253.8 148 79.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-65 253.4 146 81.5
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.2e-65 253.4 142 82.4
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.2e-65 253.4 148 78.4
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-65 253.1 146 81.5
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.6e-65 253.1 148 79.1
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.7e-65 252.3 159 76.1
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.7e-65 252.3 155 79.4
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.7e-65 252.3 146 80.8
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.7e-65 252.3 140 81.4
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.7e-65 252.3 145 80.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.7e-65 252.3 145 80.0
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 7.8e-65 250.8 151 78.1
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.0e-64 250.4 153 77.1
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.0e-64 250.4 169 73.4
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.7e-64 249.6 146 79.5
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 3.0e-64 248.8 153 75.8
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 3.9e-64 248.4 164 72.6
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 5.1e-64 248.1 155 74.8
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 8.6e-64 247.3 153 75.8
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.1e-63 246.9 142 78.2
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.5e-63 246.5 153 75.8
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.9e-63 246.1 144 77.8
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.5e-63 245.7 153 75.8
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.5e-63 245.7 138 81.2
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.5e-63 245.7 146 77.4
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.5e-63 245.7 146 77.4
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 4.3e-63 245.0 139 81.3
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.3e-63 245.0 153 76.5
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.2e-62 243.4 147 74.8
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.6e-62 243.0 146 77.4
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.8e-62 242.3 162 72.8
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.6e-62 241.9 147 74.8
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.6e-62 241.9 151 74.2
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.6e-62 241.9 159 72.3
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.1e-61 240.4 147 74.1
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.1e-61 240.4 147 74.1
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.4e-61 240.0 153 73.9
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-61 240.0 170 70.0
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.8e-61 239.6 148 73.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.8e-61 239.6 148 73.0
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.4e-61 239.2 147 73.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 2.4e-61 239.2 147 73.5
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 9.0e-61 237.3 146 74.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-60 236.5 147 72.8
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-60 236.5 147 72.8
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 3.4e-60 235.3 151 72.2
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.3e-59 233.4 143 74.1
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 5.4e-58 228.0 166 67.5
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 9.3e-58 227.3 144 72.2
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 5.6e-55 218.0 169 66.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 9.6e-55 217.2 153 71.2
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.1e-54 214.2 159 67.9
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 5.3e-53 211.5 127 79.5
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 3.8e-51 205.3 153 65.4
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 3.8e-51 205.3 122 80.3
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.4e-50 203.4 109 83.5
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.4e-50 203.4 146 67.8
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 4.2e-50 201.8 139 64.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 7.1e-50 201.1 111 83.8
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.2e-49 200.3 127 76.4
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.1e-49 199.5 142 62.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 7.9e-49 197.6 110 78.2
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.0e-48 197.2 141 63.1
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 4.3e-47 191.8 138 61.6
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.7e-46 188.7 110 80.0
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.7e-46 188.7 112 75.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.6e-44 182.6 136 58.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 9.9e-44 180.6 141 56.7
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.1e-41 172.9 152 60.5
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 8.2e-38 161.0 147 58.5
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 6.9e-37 157.9 146 58.2
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 7.1e-34 147.9 149 54.4
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.1e-32 141.7 153 51.6
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.3e-31 139.0 84 77.4
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-29 134.0 88 67.0
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 7.2e-26 121.3 142 43.0
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.3e-24 116.3 63 87.3
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.3e-22 110.5 80 68.8
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-22 110.2 111 55.0
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.7e-22 110.2 200 30.5
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.7e-22 109.0 71 73.2
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.8e-22 108.6 65 78.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.6e-20 102.8 66 75.8
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.9e-19 99.4 67 65.7
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 3.8e-19 99.0 67 73.1
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.5e-18 95.1 55 76.4
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 5.1e-16 88.6 81 54.3
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.7e-15 85.1 51 74.5
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 4.8e-14 82.0 48 75.0
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.5e-12 77.0 51 68.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.5e-12 77.0 51 68.6
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 1.9e-10 70.1 37 83.8
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-09 67.4 43 72.1
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.8e-08 63.5 39 74.4


User provided reference genes

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