Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 8.1e-143 510.4 253 100.0
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 3.7e-95 352.1 242 72.3
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 8.7e-89 330.9 242 69.8
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 1.9e-88 329.7 242 69.4
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 4.3e-88 328.6 247 66.4
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 4.3e-88 328.6 247 66.4
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 3.1e-86 322.4 240 64.6
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 6.9e-86 321.2 244 66.8
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 9.1e-86 320.9 243 65.0
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.5e-85 320.1 229 66.8
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 3.4e-85 318.9 237 67.5
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 5.9e-85 318.2 243 64.6
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 2.2e-84 316.2 233 69.1
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 2.9e-84 315.8 230 66.5
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 3.8e-84 315.5 240 65.8
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 5.0e-84 315.1 241 63.5
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 6.5e-84 314.7 242 64.9
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 8.5e-84 314.3 235 66.8
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 1.1e-83 313.9 236 65.7
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 1.4e-83 313.5 241 63.1
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.4e-83 313.5 240 66.2
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 1.9e-83 313.2 233 63.9
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 1.9e-83 313.2 242 65.3
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 4.2e-83 312.0 243 66.3
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 9.4e-83 310.8 240 62.9
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 9.4e-83 310.8 241 66.0
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 1.6e-82 310.1 243 65.4
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.1e-82 309.7 232 67.2
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 6.1e-82 308.1 232 65.9
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 2.3e-81 306.2 233 65.7
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 3.0e-81 305.8 230 67.8
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 3.0e-81 305.8 241 63.1
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 6.7e-81 304.7 240 65.4
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 8.8e-81 304.3 232 67.2
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 1.1e-80 303.9 241 64.3
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 1.5e-80 303.5 240 65.0
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 1.5e-80 303.5 238 64.3
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 7.4e-80 301.2 229 64.2
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 9.7e-80 300.8 243 63.8
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 2.2e-79 299.7 232 65.1
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 2.2e-79 299.7 242 63.6
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 2.8e-79 299.3 238 60.5
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 2.8e-79 299.3 241 63.1
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 1.4e-78 297.0 240 64.2
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 1.4e-78 297.0 232 64.2
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 1.4e-78 297.0 233 64.4
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 1.8e-78 296.6 234 63.2
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 3.1e-78 295.8 235 63.8
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 6.9e-78 294.7 232 62.1
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 6.9e-78 294.7 246 62.2
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 6.9e-78 294.7 231 63.2
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 1.5e-77 293.5 246 61.8
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 2.6e-77 292.7 234 63.7
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 1.0e-76 290.8 246 61.8
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 1.0e-76 290.8 241 61.0
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 3.8e-76 288.9 232 61.6
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 5.0e-76 288.5 230 64.3
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 5.0e-76 288.5 230 64.3
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 5.0e-76 288.5 233 63.1
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 6.5e-76 288.1 240 60.0
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 6.5e-76 288.1 237 62.4
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 5.5e-75 285.0 231 61.9
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 5.5e-75 285.0 233 61.8
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 1.6e-74 283.5 241 58.9
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 2.1e-74 283.1 238 61.8
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 4.7e-74 282.0 278 55.4
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 6.1e-74 281.6 252 58.3
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 1.0e-73 280.8 230 61.7
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 3.9e-73 278.9 238 59.2
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 6.7e-73 278.1 234 59.4
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 1.5e-72 276.9 234 59.8
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 4.4e-72 275.4 232 59.9
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 4.4e-72 275.4 231 59.7
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 9.7e-72 274.2 234 57.7
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 1.3e-71 273.9 233 59.2
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 1.3e-71 273.9 234 59.4
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 2.2e-71 273.1 234 58.1
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.8e-71 272.7 234 59.0
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 3.7e-71 272.3 234 58.1
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 6.3e-71 271.6 234 58.1
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 1.4e-70 270.4 234 57.7
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 1.4e-70 270.4 187 69.5
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 1.8e-70 270.0 234 57.7
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 1.8e-70 270.0 234 57.7
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 1.8e-70 270.0 234 57.7
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 1.8e-70 270.0 234 57.7
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 3.1e-70 269.2 234 57.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 3.1e-70 269.2 234 57.3
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 4.1e-70 268.9 234 57.7
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 5.3e-70 268.5 234 57.7
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 7.0e-70 268.1 234 56.8
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 9.1e-70 267.7 243 58.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.0e-69 266.5 234 56.4
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.0e-69 266.5 234 56.4
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 1.3e-68 263.8 232 57.8
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 6.5e-68 261.5 220 60.0
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 1.5e-67 260.4 232 57.3
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 9.4e-67 257.7 234 58.5
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 2.1e-66 256.5 314 48.1
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 2.3e-65 253.1 236 57.2
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 3.0e-65 252.7 240 57.1
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 3.0e-65 252.7 229 54.1
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 4.0e-65 252.3 233 52.4
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 5.2e-65 251.9 236 57.2
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 8.8e-65 251.1 234 56.8
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 2.6e-64 249.6 205 61.5
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 2.8e-63 246.1 179 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 3.7e-63 245.7 231 51.5
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 1.1e-62 244.2 190 65.3
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 8.5e-60 234.6 230 55.2
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.8e-57 226.9 182 59.3
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.1e-54 217.6 230 53.0
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 2.7e-53 213.0 237 49.8
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 1.0e-52 211.1 222 49.5
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 7.2e-51 204.9 160 63.8
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 9.5e-51 204.5 189 57.7
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 8.3e-47 191.4 230 40.0
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.8e-46 190.3 137 65.7
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 8.6e-44 181.4 140 65.0
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 6.1e-42 175.3 131 63.4
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 5.4e-38 162.2 137 60.6
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 5.0e-36 155.6 222 38.7
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 2.9e-31 139.8 203 37.9
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 3.6e-18 96.3 79 58.2
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 3.6e-18 96.3 79 58.2
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 5.8e-16 89.0 68 64.7
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 2.9e-15 86.7 68 61.8
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.1e-14 84.7 77 51.9
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.5e-11 74.3 65 64.6
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 1.2e-10 71.2 57 61.4
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 7.6e-08 62.0 47 59.6
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 6.4e-07 58.9 46 56.5


User provided reference genes

Program Settings