Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 8.4e-94 347.1 181 100.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.2e-77 290.8 166 88.0
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.1e-72 275.4 166 85.5
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 8.5e-70 267.3 166 82.5
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.2e-69 264.2 166 81.9
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 3.3e-66 255.4 164 82.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 9.1e-64 247.3 174 79.3
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.0e-62 243.8 167 76.6
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.0e-62 243.8 167 76.6
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 6.5e-62 241.1 185 71.9
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 6.5e-62 241.1 168 75.0
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.5e-61 240.0 167 74.9
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.9e-61 239.6 166 76.5
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.5e-61 239.2 175 74.9
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.5e-61 238.0 168 74.4
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.6e-60 236.5 168 73.2
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.7e-60 235.7 166 74.1
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 3.6e-60 235.3 132 87.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 3.6e-60 235.3 173 71.7
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.0e-59 233.8 168 74.4
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-59 233.4 182 69.8
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-59 233.0 172 74.4
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.3e-59 232.6 192 67.2
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.3e-59 232.6 171 73.7
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.3e-59 232.6 142 83.1
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 3.0e-59 232.3 167 71.9
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 4.0e-59 231.9 166 74.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.0e-59 231.9 172 74.4
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 4.0e-59 231.9 182 69.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 4.0e-59 231.9 182 69.8
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 5.2e-59 231.5 175 73.7
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.7e-59 231.1 171 73.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 8.8e-59 230.7 166 72.9
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.5e-58 229.9 169 72.8
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.0e-58 229.6 171 72.5
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.6e-58 229.2 178 71.3
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.3e-58 228.8 181 69.6
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 4.4e-58 228.4 176 71.6
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 5.7e-58 228.0 173 72.8
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 5.7e-58 228.0 180 67.2
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 7.5e-58 227.6 169 72.2
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 7.5e-58 227.6 172 73.8
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.7e-58 227.3 178 70.8
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.3e-57 226.9 166 69.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.8e-57 225.7 166 72.3
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.8e-57 224.9 171 69.0
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 8.3e-57 224.2 183 68.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 8.3e-57 224.2 169 73.4
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 8.3e-57 224.2 167 72.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.4e-56 223.4 172 71.5
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.8e-56 223.0 177 66.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.4e-56 222.6 173 69.4
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 2.4e-56 222.6 177 68.4
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.4e-56 222.6 172 70.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 3.1e-56 222.2 173 69.4
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 3.1e-56 222.2 195 65.1
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 9.1e-56 220.7 167 70.1
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 9.1e-56 220.7 166 69.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.2e-55 220.3 179 67.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.6e-55 219.9 167 70.1
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.6e-55 219.9 167 70.1
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.0e-55 219.5 172 69.2
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.0e-55 219.5 174 69.5
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.0e-55 219.5 172 69.2
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 2.0e-55 219.5 154 77.3
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.0e-55 219.5 164 71.3
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.7e-55 219.2 167 70.1
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 3.5e-55 218.8 180 68.3
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 3.5e-55 218.8 133 79.7
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.9e-54 215.7 169 68.0
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 2.9e-54 215.7 172 67.4
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 5.0e-54 214.9 163 70.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 6.5e-54 214.5 172 68.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.5e-53 213.4 169 67.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 5.5e-53 211.5 169 66.3
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 7.2e-53 211.1 169 65.7
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 9.4e-53 210.7 173 67.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.6e-52 209.9 169 65.7
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.1e-52 209.5 133 80.5
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.1e-52 209.5 177 63.3
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 8.0e-52 207.6 198 60.1
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.0e-51 207.2 151 72.8
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.3e-51 206.1 166 63.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 3.0e-51 205.7 179 64.8
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 4.0e-51 205.3 172 65.1
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.2e-50 203.8 172 64.5
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.2e-50 203.8 177 67.8
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 2.0e-50 203.0 172 66.3
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 7.5e-50 201.1 175 65.1
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 7.5e-50 201.1 173 65.3
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 7.5e-50 201.1 175 65.1
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 7.5e-50 201.1 175 65.1
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 7.5e-50 201.1 173 65.3
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 7.5e-50 201.1 170 66.5
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 9.8e-50 200.7 173 64.7
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.3e-49 200.3 184 60.9
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.7e-49 199.9 176 64.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.8e-49 199.1 167 67.1
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.7e-49 198.7 173 64.7
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.8e-48 196.4 120 82.5
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.0e-47 193.0 181 59.7
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.7e-47 192.6 172 62.2
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 3.5e-47 192.2 180 59.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 7.7e-47 191.0 175 64.6
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 5.0e-46 188.3 188 59.6
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 8.6e-46 187.6 173 59.5
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 8.6e-46 187.6 171 61.4
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 8.6e-46 187.6 174 60.9
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 8.6e-46 187.6 171 61.4
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 7.2e-45 184.5 166 59.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.3e-43 179.5 170 60.0
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.3e-43 179.5 169 60.9
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.2e-42 177.2 102 87.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.5e-42 176.8 152 67.8
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.8e-40 169.9 134 70.1
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.8e-40 169.9 137 64.2
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.0e-39 166.4 131 71.0
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 8.6e-38 161.0 91 86.8
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 5.6e-37 158.3 142 62.7
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.2e-36 157.1 185 48.6
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.0e-35 154.1 112 75.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.0e-35 154.1 185 47.0
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.0e-35 152.1 130 61.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.1e-32 144.1 102 69.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.4e-32 141.7 112 63.4
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 7.8e-31 137.9 101 68.3
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.7e-30 136.7 101 67.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 8.6e-30 134.4 124 57.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 4.3e-29 132.1 108 62.0
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 7.3e-29 131.3 90 76.7
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 9.5e-29 131.0 109 59.6
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.6e-28 129.0 102 66.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 4.7e-28 128.6 106 64.2
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.4e-26 122.1 115 59.1
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 7.5e-26 121.3 117 60.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 6.4e-25 118.2 100 57.0
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 9.2e-24 114.4 103 56.3
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 7.8e-23 111.3 103 57.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.7e-22 110.2 166 44.6
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.0e-22 109.4 98 57.1
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.9e-22 109.0 110 52.7
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 2.5e-21 106.3 99 56.6
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-20 104.0 96 65.6
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 2.3e-19 99.8 73 64.4
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 4.4e-18 95.5 143 49.0
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 9.9e-18 94.4 101 51.5
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.7e-17 93.6 102 45.1
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.7e-17 93.6 64 75.0
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.9e-17 92.8 94 54.3
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.3e-17 91.3 67 70.1
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.4e-16 90.5 98 43.9
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 6.2e-12 75.1 128 35.2


User provided reference genes

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