Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.1e-187 659.8 325 100.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.1e-123 447.2 323 69.0
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.7e-114 416.0 307 64.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.9e-113 412.5 304 66.1
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 4.0e-110 402.1 310 62.3
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 6.8e-110 401.4 307 64.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.3e-108 394.8 304 62.5
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 2.4e-107 392.9 304 64.1
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.1e-107 392.5 300 62.7
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 4.1e-107 392.1 308 63.6
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 9.2e-107 391.0 304 61.8
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.6e-106 390.2 305 63.3
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.7e-106 389.4 309 62.1
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 3.5e-106 389.0 305 61.0
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 5.9e-106 388.3 339 57.5
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.3e-105 387.1 306 62.4
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 2.9e-105 386.0 287 66.6
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.1e-104 384.0 306 61.8
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.5e-104 382.9 310 60.3
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.5e-104 382.9 308 61.0
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.5e-104 382.9 304 60.9
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.3e-104 382.5 310 61.3
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 5.6e-104 381.7 311 60.8
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 7.3e-104 381.3 310 59.0
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.2e-103 380.6 318 61.6
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.6e-103 380.2 324 60.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 2.1e-103 379.8 302 60.9
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 4.7e-103 378.6 303 62.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 4.7e-103 378.6 306 62.1
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.8e-102 376.7 308 59.1
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 8.9e-102 374.4 312 58.0
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 5.7e-101 371.7 303 60.1
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 6.4e-100 368.2 308 56.8
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 6.4e-100 368.2 308 56.8
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.4e-99 367.1 311 57.6
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 5.4e-99 365.2 309 58.9
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 7.0e-99 364.8 297 59.3
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 9.2e-99 364.4 275 63.6
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.6e-98 363.6 298 59.4
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.7e-98 362.8 308 58.1
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.9e-98 361.7 309 58.6
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.0e-97 360.9 312 58.0
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.7e-97 360.1 305 59.0
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.7e-97 360.1 302 57.6
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.7e-97 360.1 302 57.3
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.9e-97 359.0 312 57.7
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-96 357.5 298 59.4
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.5e-96 357.1 306 55.6
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.9e-96 356.7 298 58.4
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 3.6e-95 352.4 301 56.8
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 6.2e-95 351.7 309 57.0
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 3.1e-94 349.4 307 57.0
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 4.0e-94 349.0 309 55.7
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 5.2e-94 348.6 304 55.9
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 5.2e-94 348.6 304 55.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 6.8e-94 348.2 288 59.4
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 5.8e-93 345.1 308 56.5
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.7e-92 343.6 299 56.9
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 3.7e-92 342.4 301 54.8
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.4e-91 340.5 339 54.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 5.4e-91 338.6 305 56.4
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.2e-90 337.4 305 57.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 6.6e-89 331.6 364 50.0
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 8.6e-89 331.3 308 55.8
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 3.3e-88 329.3 308 55.2
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 7.3e-88 328.2 248 66.5
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.4e-86 323.9 277 59.9
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 2.0e-85 320.1 292 56.8
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 7.5e-85 318.2 273 59.3
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.7e-84 317.0 289 55.0
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.9e-84 316.2 311 52.4
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 6.4e-84 315.1 309 50.5
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 8.3e-84 314.7 303 51.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.1e-83 314.3 306 51.3
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 5.4e-83 312.0 300 52.7
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 9.2e-83 311.2 303 51.5
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.6e-82 310.5 303 51.2
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.6e-82 310.5 303 51.2
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.1e-82 310.1 225 66.2
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.7e-82 309.7 300 52.0
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.5e-82 309.3 303 52.5
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.7e-81 307.0 284 53.9
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 8.6e-81 304.7 303 53.5
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.1e-80 304.3 225 64.0
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.5e-80 303.9 283 54.8
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 2.5e-80 303.1 291 52.2
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.3e-80 302.4 279 55.6
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.3e-80 302.4 275 54.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 7.3e-80 301.6 300 51.7
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.4e-78 297.4 301 51.8
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 2.6e-77 293.1 224 62.5
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 4.4e-77 292.4 281 54.4
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 4.4e-77 292.4 297 51.2
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.4e-77 292.4 228 63.2
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 5.8e-77 292.0 305 50.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.2e-76 290.0 261 53.6
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 4.9e-76 288.9 301 52.5
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 4.6e-74 282.3 223 60.1
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 3.9e-73 279.3 303 48.8
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 6.6e-73 278.5 285 50.5
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 5.6e-72 275.4 314 47.8
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.6e-72 274.6 250 53.2
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.4e-70 270.0 292 51.7
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 8.9e-70 268.1 307 47.2
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 3.4e-69 266.2 241 59.8
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.2e-67 259.6 221 57.0
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 4.2e-67 259.2 292 49.7
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.4e-67 258.8 245 55.1
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.6e-66 257.3 301 48.2
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.1e-66 256.9 292 49.0
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.7e-65 253.8 308 43.8
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.3e-64 248.4 306 43.1
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 4.6e-58 229.2 291 45.4
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.7e-57 225.3 166 66.3
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.6e-55 220.7 298 41.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 1.1e-54 218.0 287 42.2
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 5.3e-54 215.7 218 50.0
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 6.9e-54 215.3 171 64.3
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 5.8e-53 212.2 293 43.3
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 9.3e-51 204.9 191 51.8
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 9.3e-51 204.9 288 42.0
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 2.7e-50 203.4 312 39.7
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 3.5e-50 203.0 187 55.1
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 2.1e-47 193.7 179 51.4
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.3e-44 184.5 291 40.9
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.4e-43 181.0 210 48.6
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 3.2e-43 179.9 136 59.6
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.9e-40 170.6 155 56.8
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 3.8e-36 156.4 255 41.6
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 6.5e-36 155.6 134 52.2
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.8e-33 147.5 109 64.2
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-32 144.8 109 63.3
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 5.3e-30 136.0 122 55.7
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 5.0e-28 129.4 124 51.6
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 8.5e-28 128.6 118 55.1
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 4.8e-23 112.8 174 36.8
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 5.5e-19 99.4 209 34.4
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.0e-17 93.6 99 46.5
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 4.8e-15 86.3 101 45.5
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.1e-14 85.1 112 45.5
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 2.4e-14 84.0 348 23.9
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 5.9e-13 79.3 79 49.4
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.5e-11 74.7 284 23.6
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 2.1e-10 70.9 209 27.8
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 3.6e-10 70.1 262 25.6
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.0e-09 68.6 47 61.7
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.0e-09 68.6 59 49.2
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 1.8e-09 67.8 169 32.5
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 4.0e-09 66.6 264 26.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 6.7e-09 65.9 256 25.8
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 2.0e-08 64.3 49 59.2
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 2.0e-08 64.3 49 59.2
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 3.3e-08 63.5 209 28.7
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 4.4e-08 63.2 259 26.3
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 5.7e-08 62.8 262 26.7
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 7.5e-08 62.4 256 25.8
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 9.7e-08 62.0 256 25.4
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 1.3e-07 61.6 226 28.8
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.2e-07 60.8 256 25.0
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 3.7e-07 60.1 172 27.3
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 4.8e-07 59.7 246 24.4
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 6.3e-07 59.3 167 28.1
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 1.1e-06 58.5 252 24.2
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.4e-06 58.2 167 26.9
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.4e-06 58.2 223 26.5
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 1.8e-06 57.8 261 25.7
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.8e-06 57.8 256 25.4
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 2.4e-06 57.4 167 26.9
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 2.4e-06 57.4 219 26.0
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 3.1e-06 57.0 193 27.5
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 4.1e-06 56.6 246 25.2
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 5.3e-06 56.2 257 24.5
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 5.3e-06 56.2 257 24.5
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 5.3e-06 56.2 257 24.5
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 5.3e-06 56.2 222 27.0
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 7.0e-06 55.8 172 27.3
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 7.0e-06 55.8 264 25.0
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 9.1e-06 55.5 152 28.3
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 9.1e-06 55.5 153 31.4
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 9.1e-06 55.5 126 32.5


User provided reference genes

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