Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14481 Nelumbo nucifera HOM05D004225 ORTHO05D004728 0.0e+00 1240.7 633 100.0
TAR633G0301 Trochodendron aralioides HOM05D004225 ORTHO05D004728 6.4e-213 744.6 638 63.6
Dinv25097 Davidia involucrata HOM05D004225 ORTHO05D004728 3.4e-198 695.7 640 60.6
Actinidia37791 Actinidia chinensis HOM05D004225 ORTHO05D004728 1.4e-196 690.3 643 60.0
QL07p018789 Quercus lobata HOM05D004225 ORTHO05D004728 7.8e-195 684.5 642 60.0
Aqoxy1G00553 Aquilegia oxysepala HOM05D004225 ORTHO05D004728 8.1e-192 674.5 642 57.5
Atru.chr2.1407 Acer truncatum HOM05D004225 ORTHO05D004728 1.7e-189 666.8 644 58.7
CSS0022490 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 1.9e-188 663.3 642 57.5
PSO384G1703 Papaver somniferum HOM05D004225 ORTHO05D004728 6.0e-187 658.3 642 57.9
PSO339G3394 Papaver somniferum HOM05D004225 ORTHO05D004728 1.3e-186 657.1 642 58.1
CSS0005542 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 3.0e-186 656.0 642 57.2
Rhsim03G0054800 Rhododendron simsii HOM05D004225 ORTHO05D004728 6.6e-186 654.8 645 58.4
Thecc.05G246800 Theobroma cacao HOM05D004225 ORTHO05D004728 3.3e-185 652.5 642 58.6
Actinidia03947 Actinidia chinensis HOM05D004225 ORTHO05D004728 4.7e-184 648.7 644 58.5
Manes.09G139100 Manihot esculenta HOM05D004225 ORTHO05D004728 6.8e-183 644.8 640 58.0
Prupe.7G007400 Prunus persica HOM05D004225 ORTHO05D004728 8.9e-183 644.4 638 57.2
Cfa017675 Carpinus fangiana HOM05D004225 ORTHO05D004728 1.5e-182 643.7 645 56.1
Duzib177G1146 Durio zibethinus HOM05D004225 ORTHO05D004728 3.4e-182 642.5 643 57.5
Duzib128G0769 Durio zibethinus HOM05D004225 ORTHO05D004728 4.4e-182 642.1 642 57.6
Gohir.D11G244200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 9.9e-182 641.0 646 57.6
Gorai.007G259700 Gossypium raimondii HOM05D004225 ORTHO05D004728 2.9e-181 639.4 647 57.5
MBI11_g07706_MAGBIO Magnolia biondii HOM05D004225 ORTHO05D004728 1.9e-180 636.7 641 57.1
vmacro07548 Vaccinium macrocarpon HOM05D004225 ORTHO05D004728 2.4e-180 636.3 684 54.5
Glyma.19G113700 Glycine max HOM05D004225 ORTHO05D004728 3.2e-180 636.0 645 56.4
COL.COLO4_32974 Corchorus olitorius HOM05D004225 ORTHO05D004728 2.1e-179 633.3 642 57.8
Haze_20474 Corylus avellana HOM05D004225 ORTHO05D004728 6.6e-178 628.2 640 55.3
Gohir.A11G233000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 8.7e-178 627.9 641 57.4
MD12G1006900 Malus domestica HOM05D004225 ORTHO05D004728 1.6e-176 623.6 637 56.2
Cpa.g.sc161.2 Carica papaya HOM05D004225 ORTHO05D004728 4.0e-175 619.0 636 55.2
Ca_08286_v3 Cicer arietinum L. HOM05D004225 ORTHO05D004728 3.4e-174 615.9 651 55.1
CiPaw.10G126100 Carya illinoinensis HOM05D004225 ORTHO05D004728 1.7e-173 613.6 639 53.8
Medtr7g086050 Medicago truncatula HOM05D004225 ORTHO05D004728 1.7e-173 613.6 645 54.3
VMungo1383G3152 Vigna mungo HOM05D004225 ORTHO05D004728 2.9e-173 612.8 652 55.4
Lalb_Chr14g0364611 Lupinus albus HOM05D004225 ORTHO05D004728 3.8e-173 612.5 645 55.0
Phvul.001G113200 Phaseolus vulgaris HOM05D004225 ORTHO05D004728 1.9e-172 610.1 652 55.2
MD14G1004600 Malus domestica HOM05D004225 ORTHO05D004728 3.2e-172 609.4 639 56.0
GSVIVG01022462001 Vitis vinifera HOM05D004225 ORTHO05D004728 1.6e-171 607.1 640 56.9
Ciclev10018636m.g Citrus clementina HOM05D004225 ORTHO05D004728 2.7e-171 606.3 643 55.4
RcHm_v2.0_Chr3g0496671 Rosa chinensis HOM05D004225 ORTHO05D004728 3.5e-171 605.9 640 55.8
arahy.Tifrunner.gnm1.ann1.4I2AVL Arachis hypogaea HOM05D004225 ORTHO05D004728 1.1e-169 600.9 648 53.7
TWI60G0668 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 1.5e-169 600.5 639 55.9
arahy.Tifrunner.gnm1.ann1.MX8T8B Arachis hypogaea HOM05D004225 ORTHO05D004728 3.3e-169 599.4 648 54.3
Cc06_g07240 Coffea canephora HOM05D004225 ORTHO05D004728 4.3e-169 599.0 643 54.1
Lj2A418T70 Lonicera japonica HOM05D004225 ORTHO05D004728 4.3e-169 599.0 657 53.6
CANSAT78G2348 Cannabis sativa HOM05D004225 ORTHO05D004728 7.4e-169 598.2 643 54.6
Lj1g0011347 Lotus japonicus HOM05D004225 ORTHO05D004728 4.8e-168 595.5 650 54.3
Potri.013G055300 Populus trichocarpa HOM05D004225 ORTHO05D004728 4.8e-168 595.5 639 55.4
TWI32G0579 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 1.8e-167 593.6 640 55.2
Nitab4.5_0001355g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 5.3e-167 592.0 641 53.7
MSTRG.5924 Avicennia marina HOM05D004225 ORTHO05D004728 9.0e-167 591.3 655 55.0
DCAR_020662 Daucus carota HOM05D004225 ORTHO05D004728 1.5e-166 590.5 660 53.0
Sabra13G0049600 Salix brachista HOM05D004225 ORTHO05D004728 7.6e-166 588.2 642 54.0
FvH4_1g28360 Fragaria vesca HOM05D004225 ORTHO05D004728 2.9e-165 586.3 639 54.0
Peaxi162Scf00061g00247 Petunia axillaris HOM05D004225 ORTHO05D004728 1.4e-164 583.9 644 53.1
FAN23G2269 Fragaria x ananassa HOM05D004225 ORTHO05D004728 2.4e-164 583.2 639 53.7
Sc01g0005150 Simmondsia chinensis HOM05D004225 ORTHO05D004728 6.0e-163 578.6 648 53.5
Eucgr.A02119 Eucalyptus grandis HOM05D004225 ORTHO05D004728 1.5e-161 573.9 645 53.2
Sopen01g020500 Solanum pennellii HOM05D004225 ORTHO05D004728 1.5e-161 573.9 642 52.3
Solyc01g056570.3 Solanum lycopersicum HOM05D004225 ORTHO05D004728 1.9e-161 573.5 642 52.5
THA.LOC104820785 Tarenaya hassleriana HOM05D004225 ORTHO05D004728 3.3e-161 572.8 648 52.9
HanXRQChr14g0453121 Helianthus annuus HOM05D004225 ORTHO05D004728 1.6e-160 570.5 656 52.0
PGSC0003DMG400005593 Solanum tuberosum HOM05D004225 ORTHO05D004728 1.1e-159 567.8 642 52.3
PGR042G0202 Punica granatum HOM05D004225 ORTHO05D004728 4.0e-159 565.8 643 54.3
CAN.G170.116 Capsicum annuum HOM05D004225 ORTHO05D004728 5.8e-158 562.0 643 52.6
SalBow3G0054 Salvia bowleyana HOM05D004225 ORTHO05D004728 5.8e-158 562.0 708 49.7
FAN19G2926 Fragaria x ananassa HOM05D000495 ORTHO05D004728 2.9e-157 559.7 630 53.2
Thhalv10019953m.g Eutrema salsugineum HOM05D004225 ORTHO05D004728 1.1e-156 557.8 645 50.7
Sp3g02770 Schrenkiella parvula HOM05D004225 ORTHO05D004728 3.5e-155 552.7 639 50.4
Carub.0003s0296 Capsella rubella HOM05D004225 ORTHO05D004728 7.9e-155 551.6 644 50.3
Lsat_1_v5_gn_2_103941 Lactuca sativa HOM05D004225 ORTHO05D004728 1.5e-153 547.4 659 51.3
AT3G03790 Arabidopsis thaliana HOM05D004225 ORTHO05D004728 2.5e-153 546.6 642 50.3
HPP92_028052 Vanilla planifolia HOM05D004225 ORTHO05D004728 2.5e-153 546.6 640 51.4
SGA_v2.0_scaffold112G31648 Striga asiatica HOM05D004225 ORTHO05D004728 3.7e-152 542.7 654 50.6
Zm00001eb300770 Zea mays HOM05D004225 ORTHO05D004728 3.1e-151 539.7 649 48.7
EL10Ac5g11767 Beta vulgaris HOM05D004225 ORTHO05D004728 4.1e-151 539.3 612 52.5
Aa31LG5G14340 Aethionema arabicum HOM05D004225 ORTHO05D004728 1.2e-150 537.7 637 50.1
MELO3C024751.2 Cucumis melo HOM05D004225 ORTHO05D004728 4.5e-150 535.8 619 52.8
BraA05t23099Z Brassica rapa HOM05D004225 ORTHO05D004728 3.8e-149 532.7 642 50.6
ClCG02G007850 Citrullus lanatus HOM05D004225 ORTHO05D004728 3.8e-149 532.7 619 52.5
BcaC05g29906 Brassica carinata HOM05D004225 ORTHO05D004728 1.1e-148 531.2 646 50.2
CARHR077860 Cardamine hirsuta HOM05D004225 ORTHO05D004728 1.1e-148 531.2 640 50.5
AL3G13620 Arabidopsis lyrata HOM05D004225 ORTHO05D004728 4.2e-148 529.3 642 49.4
CsaV3_2G035890 Cucumis sativus L. HOM05D004225 ORTHO05D004728 1.2e-147 527.7 618 51.8
A05p43600 Brassica napus HOM05D004225 ORTHO05D004728 2.7e-147 526.6 649 50.2
BolC5t34981H Brassica oleracea HOM05D004225 ORTHO05D004728 1.8e-146 523.9 641 49.8
Hund10817 Selenicereus undatus HOM05D004225 ORTHO05D004728 6.7e-146 521.9 608 50.5
Migut.J00760 Erythranthe guttata HOM05D004225 ORTHO05D004728 8.7e-146 521.5 662 49.5
C05p63190 Brassica napus HOM05D004225 ORTHO05D004728 5.7e-145 518.8 647 50.2
Sed0003216 Sechium edule HOM05D004225 ORTHO05D004728 9.7e-145 518.1 620 51.0
Ah.12g059700 Amaranthus hybridus HOM05D004225 ORTHO05D004728 6.3e-144 515.4 613 51.2
FAN26G1663 Fragaria x ananassa HOM05D004225 ORTHO05D004728 1.1e-143 514.6 637 49.5
Gohir.A13G165100 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.1e-143 514.6 636 48.9
ECA238G0084 Erigeron canadensis HOM05D004225 ORTHO05D004728 3.1e-143 513.1 612 51.5
AUR62036278 Chenopodium quinoa HOM05D004225 ORTHO05D004728 6.9e-143 511.9 642 49.5
BcaC05g30250 Brassica carinata HOM05D004225 ORTHO05D004728 2.0e-142 510.4 653 49.5
unitig_27.g24735 Utricularia gibba HOM05D004225 ORTHO05D004728 2.0e-142 510.4 658 50.0
AUR62039726 Chenopodium quinoa HOM05D004225 ORTHO05D004728 3.4e-142 509.6 644 49.1
Glyma.16G038900 Glycine max HOM05D004225 ORTHO05D004728 5.7e-137 492.3 575 52.0
ATR0697G085 Amborella trichopoda HOM05D004225 ORTHO05D004728 6.3e-136 488.8 662 47.4
Dinv11924 Davidia involucrata HOM05D004225 ORTHO05D004728 1.3e-125 454.5 380 65.0
BcaC05g30283 Brassica carinata HOM05D004225 ORTHO05D004728 3.0e-122 443.4 646 45.4
Gorai.013G194200 Gossypium raimondii HOM05D004225 ORTHO05D004728 5.9e-118 429.1 639 45.4
SHI13905 Sapria himalayana HOM05D004225 ORTHO05D004728 1.7e-117 427.6 646 44.4
Gohir.D13G168000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 4.7e-115 419.5 620 45.2
SEGI_41481 Sequoiadendron giganteum HOM05D004225 ORTHO05D004728 4.4e-113 412.9 698 38.8
TPR.G31024 Trifolium pratense HOM05D004225 ORTHO05D004728 1.4e-106 391.3 354 57.9
Nitab4.5_0022463g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 4.4e-105 386.3 452 52.7
Psat3g087720 Pisum sativum HOM05D004225 ORTHO05D004728 3.4e-97 360.1 352 56.2
SMO367G1027 Selaginella moellendorffii HOM05D004225 ORTHO05D004728 2.9e-88 330.5 660 38.5
Mapoly0082s0025 Marchantia polymorpha HOM05D004225 ORTHO05D004728 8.3e-88 328.9 728 36.0
Psat3g087760 Pisum sativum HOM05D004225 ORTHO05D004728 2.1e-83 314.3 663 38.5
CDE10G0988 Ceratophyllum demersum HOM05D004225 ORTHO05D004728 3.1e-82 310.5 348 50.0
Os07g0165200 Oryza sativa ssp. japonica HOM05D004225 ORTHO05D004728 3.3e-76 290.4 313 50.2
Pp3c8_24330 Physcomitrium patens HOM05D004225 ORTHO05D004728 3.6e-75 287.0 763 33.9
AagrBONN_evm.TU.Sc2ySwM_228.1834 Anthoceros agrestis HOM05D004225 ORTHO05D004728 1.4e-63 248.4 645 33.8
Psat1g054520 Pisum sativum HOM05D004225 ORTHO05D004728 1.6e-59 235.0 198 60.6
Psat3g053440 Pisum sativum HOM05D004225 ORTHO05D004728 1.6e-59 235.0 200 61.0
TPR.G39963 Trifolium pratense HOM05D004225 ORTHO05D004728 4.5e-57 226.9 290 48.3
Oeu029553.1 Olea europaea HOM05D004225 ORTHO05D004728 3.3e-52 210.7 370 40.0
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.3e-51 208.8 162 64.2
Psat6g077720 Pisum sativum HOM05D001825 ORTHO05D004728 9.3e-47 192.6 294 42.2
Nitab4.5_0010528g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 3.9e-45 187.2 161 57.1
CBR_g37359 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-44 184.9 684 27.5
Psat2g062640 Pisum sativum HOM05D000250 ORTHO05D002477 1.8e-42 178.3 218 45.9
Gohir.A11G205501 Gossypium hirsutum HOM05D000558 ORTHO05D001857 1.8e-26 125.2 125 59.2
Psat3g053200 Pisum sativum HOM05D004225 ORTHO05D004728 1.9e-23 115.2 80 65.0
Zm00001eb196450 Zea mays HOM05D004225 ORTHO05D004728 3.0e-21 107.8 71 67.6
Psat0s5023g0080 Pisum sativum HOM05D004225 ORTHO05D004728 2.2e-16 91.7 97 54.6
Psat5g115680 Pisum sativum HOM05D004225 ORTHO05D004728 2.2e-16 91.7 97 54.6
Gohir.D09G044750 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.0e-09 68.6 47 61.7
Gohir.D08G082500 Gossypium hirsutum HOM05D001780 ORTHO05D004728 2.6e-09 68.2 47 61.7
Gohir.D11G104600 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.6e-09 68.2 47 61.7
Gohir.D13G173925 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.6e-09 68.2 47 61.7
Gorai.007G111900 Gossypium raimondii HOM05D004225 ORTHO05D004728 2.6e-09 68.2 47 61.7
Gorai.N008400 Gossypium raimondii HOM05D004225 ORTHO05D004728 2.6e-09 68.2 47 61.7
Gorai.005G091800 Gossypium raimondii HOM05D004225 ORTHO05D004728 3.5e-09 67.8 47 61.7
Gorai.006G065700 Gossypium raimondii HOM05D004225 ORTHO05D004728 3.5e-09 67.8 47 61.7
Gorai.012G030100 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.0e-08 66.2 47 59.6
Gorai.008G213700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.7e-08 65.5 47 59.6
Gohir.D09G057401 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.9e-08 64.7 47 59.6
Gorai.013G083400 Gossypium raimondii HOM05D004225 ORTHO05D004728 5.0e-08 63.9 48 60.4
Gohir.D02G099701 Gossypium hirsutum HOM05D004225 ORTHO05D004728 6.5e-08 63.5 48 60.4
Gohir.D02G100000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 6.5e-08 63.5 48 60.4
Gohir.D02G100001 Gossypium hirsutum HOM05D004225 ORTHO05D004728 6.5e-08 63.5 48 60.4
Gohir.D03G090000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 6.5e-08 63.5 48 60.4
Gorai.011G131900 Gossypium raimondii HOM05D004225 ORTHO05D004728 8.5e-08 63.2 47 59.6
Gohir.D10G200650 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.9e-07 62.0 49 57.1
Gohir.A04G063985 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.2e-07 61.2 44 59.1
Gohir.A04G120200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.2e-07 61.2 44 59.1
Gohir.A11G197325 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.2e-07 61.2 44 59.1
Gohir.A13G182600 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.2e-07 61.2 44 59.1
Gohir.D13G104300 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.2e-07 61.2 44 59.1
Gohir.D13G171500 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.2e-07 61.2 44 59.1
Gohir.D03G046700 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.2e-06 59.3 44 56.8
Gohir.D10G031000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.6e-06 58.9 44 56.8


User provided reference genes

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