Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 4.7e-106 387.9 197 100.0
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.5e-35 153.7 179 53.6
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 1.2e-32 144.1 193 46.6
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.2e-31 139.8 183 47.0
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 6.5e-31 138.3 206 47.1
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 1.2e-29 134.0 180 48.3
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 1.2e-29 134.0 180 48.3
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 1.6e-29 133.7 186 47.3
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 1.4e-28 130.6 186 47.3
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 3.9e-28 129.0 186 47.8
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 8.8e-28 127.9 206 43.7
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.1e-27 127.5 196 45.4
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 1.5e-27 127.1 188 45.2
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 3.3e-27 125.9 185 44.9
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 9.7e-27 124.4 179 45.3
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 1.7e-26 123.6 186 46.8
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 3.7e-26 122.5 188 45.2
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 4.8e-26 122.1 185 48.1
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 8.2e-26 121.3 181 45.9
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.1e-25 120.9 183 44.8
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 1.4e-25 120.6 185 48.1
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.8e-25 120.2 181 45.9
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.8e-25 120.2 181 45.9
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 3.1e-25 119.4 183 45.4
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 6.9e-25 118.2 181 45.9
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 2.6e-24 116.3 186 45.7
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 2.6e-24 116.3 191 42.9
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.6e-24 116.3 183 44.8
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.6e-24 116.3 180 41.1
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 3.4e-24 115.9 188 43.1
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 3.4e-24 115.9 181 45.3
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 4.5e-24 115.5 181 45.3
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 1.0e-23 114.4 187 47.1
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 2.2e-23 113.2 186 43.5
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 6.5e-23 111.7 153 46.4
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 8.5e-23 111.3 180 43.9
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 1.1e-22 110.9 187 42.8
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 1.4e-22 110.5 190 42.6
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 1.9e-22 110.2 188 39.4
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 1.9e-22 110.2 184 45.7
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 9.4e-22 107.8 193 42.0
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.2e-21 107.5 183 42.6
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 1.2e-21 107.5 199 41.7
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 2.1e-21 106.7 195 40.5
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 2.1e-21 106.7 184 43.5
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 6.1e-21 105.1 165 41.2
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 1.4e-20 104.0 182 44.0
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 1.4e-20 104.0 182 44.0
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.8e-20 103.6 181 40.9
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 2.3e-20 103.2 186 41.4
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 3.0e-20 102.8 187 41.2
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 3.9e-20 102.4 182 42.9
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 5.1e-20 102.1 182 43.4
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 5.1e-20 102.1 188 41.5
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 6.7e-20 101.7 189 42.9
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 6.7e-20 101.7 181 43.6
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 1.1e-19 100.9 183 42.1
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 1.5e-19 100.5 183 42.1
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 2.0e-19 100.1 182 42.9
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 7.4e-19 98.2 183 42.1
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.3e-18 97.4 187 41.7
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 4.8e-18 95.5 180 40.6
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 4.8e-18 95.5 185 39.5
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 8.2e-18 94.7 183 42.6
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 8.2e-18 94.7 191 41.4
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 1.1e-17 94.4 185 39.5
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 1.1e-17 94.4 203 38.9
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 3.1e-17 92.8 188 42.6
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 3.1e-17 92.8 188 42.6
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 3.1e-17 92.8 181 39.8
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 4.1e-17 92.4 185 41.6
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 5.3e-17 92.0 194 37.6
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 1.2e-16 90.9 213 37.6
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 1.2e-16 90.9 205 39.5
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 2.0e-16 90.1 182 41.8
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 2.0e-16 90.1 182 41.8
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 2.0e-16 90.1 183 36.6
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 3.5e-16 89.4 180 36.7
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 4.5e-16 89.0 179 43.6
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 4.5e-16 89.0 220 37.3
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 7.7e-16 88.2 133 42.9
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 1.0e-15 87.8 193 36.8
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 1.3e-15 87.4 185 39.5
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 1.3e-15 87.4 193 34.7
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 1.3e-15 87.4 180 42.2
Gorai.009G269300 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.9e-15 86.3 182 41.8
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 5.0e-15 85.5 210 36.2
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.0e-15 85.5 181 35.9
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 5.0e-15 85.5 212 37.7
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 5.0e-15 85.5 192 36.5
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 6.5e-15 85.1 185 38.9
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 6.5e-15 85.1 187 38.0
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.5e-14 84.0 181 35.4
arahy.Tifrunner.gnm1.ann1.DM1BVQ Arachis hypogaea HOM05D057335 ORTHO05D003264 2.5e-14 83.2 216 36.6
arahy.Tifrunner.gnm1.ann1.FUM12Z Arachis hypogaea HOM05D057335 ORTHO05D003264 2.5e-14 83.2 216 36.6
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 2.5e-14 83.2 180 38.3
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 4.2e-14 82.4 187 40.1
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 5.5e-14 82.0 186 38.2
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 5.5e-14 82.0 180 38.3
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 7.2e-14 81.6 181 38.1
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 7.2e-14 81.6 178 36.0
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 7.2e-14 81.6 195 36.4
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 9.4e-14 81.3 187 40.6
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.2e-13 80.9 199 35.7
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 1.2e-13 80.9 192 35.9
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.1e-13 80.1 192 34.4
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 2.7e-13 79.7 199 35.7
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 2.7e-13 79.7 198 36.9
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.6e-13 79.3 201 36.8
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 3.6e-13 79.3 184 38.0
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 3.6e-13 79.3 192 33.9
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 4.7e-13 79.0 205 35.6
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 4.7e-13 79.0 206 34.5
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 1.0e-12 77.8 183 37.2
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 1.0e-12 77.8 199 35.7
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 1.0e-12 77.8 193 37.3
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 1.8e-12 77.0 179 38.5
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 1.8e-12 77.0 187 37.4
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.3e-12 76.6 187 38.5
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 3.0e-12 76.3 198 34.8
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 3.0e-12 76.3 202 34.7
Gohir.A05G256250 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.0e-12 76.3 182 37.4
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 3.0e-12 76.3 184 34.8
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 3.9e-12 75.9 185 37.3
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 3.9e-12 75.9 186 36.0
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 5.2e-12 75.5 179 38.0
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 5.2e-12 75.5 208 33.7
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 5.2e-12 75.5 202 35.1
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 5.2e-12 75.5 183 38.3
CiPaw.08G068400 Carya illinoinensis HOM05D003331 ORTHO05D003264 6.7e-12 75.1 105 44.8
Sed0019142 Sechium edule HOM05D003331 ORTHO05D003264 1.1e-11 74.3 179 37.4
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 1.5e-11 73.9 194 36.6
Cpa.g.sc6.298 Carica papaya HOM05D003331 ORTHO05D003264 2.0e-11 73.6 153 39.9
Solyc02g061990.3 Solanum lycopersicum HOM05D003331 ORTHO05D003264 3.3e-11 72.8 178 34.8
Rhsim10G0207400 Rhododendron simsii HOM05D003331 ORTHO05D003264 7.4e-11 71.6 185 35.1
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 9.7e-11 71.2 183 36.1
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.7e-10 70.5 199 34.7
Glyma.16G123451 Glycine max HOM05D003331 ORTHO05D003264 2.2e-10 70.1 186 31.7
Prupe.1G361100 Prunus persica HOM05D003331 ORTHO05D003264 2.8e-10 69.7 210 35.2
PSO541G2637 Papaver somniferum HOM05D003331 ORTHO05D003264 6.3e-10 68.6 231 33.3
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 6.3e-10 68.6 193 34.2
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 6.3e-10 68.6 180 33.9
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 6.3e-10 68.6 187 34.2
PSO675G4415 Papaver somniferum HOM05D003331 ORTHO05D003264 1.1e-09 67.8 234 33.3
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.1e-09 67.8 199 36.2
ECA232G3395 Erigeron canadensis HOM05D003331 ORTHO05D003264 1.4e-09 67.4 202 32.2
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 3.1e-09 66.2 180 34.4
Glyma.02G045500 Glycine max HOM05D003331 ORTHO05D003264 3.1e-09 66.2 194 33.0
A07p03180 Brassica napus HOM05D003331 ORTHO05D003264 4.1e-09 65.9 180 34.4
BraA07t28114Z Brassica rapa HOM05D003331 ORTHO05D003264 4.1e-09 65.9 180 34.4
ClCG10G000520 Citrullus lanatus HOM05D003331 ORTHO05D003264 5.3e-09 65.5 183 35.0
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 9.1e-09 64.7 179 34.1
C07p05420 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-08 63.9 180 36.1
BcaC06g36320 Brassica carinata HOM05D003331 ORTHO05D003264 2.0e-08 63.5 180 32.8
Gohir.D05G258000 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.6e-08 63.2 136 41.2
MD15G1008300 Malus domestica HOM05D003331 ORTHO05D003264 2.6e-08 63.2 205 35.1
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 2.6e-08 63.2 182 33.5
TPR.G10558 Trifolium pratense HOM05D003331 ORTHO05D003264 2.6e-08 63.2 214 34.6
FAN15G0714 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.5e-08 62.8 193 29.5
ATR0180G005 Amborella trichopoda HOM05D000531 ORTHO05D003264 5.9e-08 62.0 182 34.6
BolC7t40942H Brassica oleracea HOM05D003331 ORTHO05D003264 5.9e-08 62.0 180 35.6
VMungo0251G3205 Vigna mungo HOM05D003331 ORTHO05D003264 5.9e-08 62.0 194 34.5
PGSC0003DMG400003652 Solanum tuberosum HOM05D003331 ORTHO05D003264 7.7e-08 61.6 101 39.6
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 1.0e-07 61.2 179 34.6
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 1.0e-07 61.2 179 34.6
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 1.0e-07 61.2 179 34.6
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 1.7e-07 60.5 179 33.0
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 2.2e-07 60.1 192 31.8
Ah.03g143180 Amaranthus hybridus HOM05D000531 ORTHO05D003264 1.1e-06 57.8 198 32.8
PGR031G1921 Punica granatum HOM05D003331 ORTHO05D003264 1.9e-06 57.0 190 31.6
PGR083G0975 Punica granatum HOM05D003331 ORTHO05D003264 2.5e-06 56.6 184 31.0
Hund05165 Selenicereus undatus HOM05D003331 ORTHO05D003264 7.2e-06 55.1 210 29.5
FAN27G3080 Fragaria x ananassa HOM05D003331 ORTHO05D003264 9.4e-06 54.7 192 29.2
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 9.4e-06 54.7 182 31.9


User provided reference genes

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