Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.2e-65 253.1 129 100.0
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 1.5e-36 156.4 129 68.2
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 4.8e-35 151.4 131 66.4
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 9.1e-34 147.1 127 63.0
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 1.6e-33 146.4 131 63.4
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.6e-33 146.4 128 60.2
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 2.0e-33 146.0 130 66.2
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 3.5e-33 145.2 125 63.2
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 5.9e-33 144.4 97 70.1
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 5.9e-33 144.4 129 58.9
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 7.7e-33 144.1 128 60.2
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 1.0e-32 143.7 127 61.4
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 1.0e-32 143.7 112 65.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.3e-32 143.3 97 69.1
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.7e-32 142.9 127 61.4
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 1.7e-32 142.9 128 62.5
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 2.3e-32 142.5 126 63.5
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 2.3e-32 142.5 127 63.8
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 2.3e-32 142.5 132 60.6
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 5.0e-32 141.4 129 57.4
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 6.5e-32 141.0 131 59.5
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 6.5e-32 141.0 98 68.4
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 8.6e-32 140.6 135 59.3
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.1e-31 140.2 98 69.4
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 1.5e-31 139.8 103 66.0
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 1.5e-31 139.8 103 66.0
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 1.5e-31 139.8 129 59.7
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 1.5e-31 139.8 131 59.5
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.9e-31 139.4 128 57.8
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 1.9e-31 139.4 132 59.8
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 2.5e-31 139.0 127 60.6
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 2.5e-31 139.0 129 59.7
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 3.2e-31 138.7 127 62.2
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 3.2e-31 138.7 129 59.7
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 4.2e-31 138.3 127 59.1
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 4.2e-31 138.3 132 60.6
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 4.2e-31 138.3 127 59.1
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 9.5e-31 137.1 131 58.0
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 1.2e-30 136.7 109 63.3
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 2.1e-30 136.0 127 61.4
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 3.6e-30 135.2 127 61.4
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 6.1e-30 134.4 130 59.2
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 8.0e-30 134.0 139 51.8
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 8.0e-30 134.0 103 66.0
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 8.0e-30 134.0 103 66.0
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 8.0e-30 134.0 91 64.8
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 3.0e-29 132.1 92 71.7
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 5.2e-29 131.3 118 58.5
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 5.2e-29 131.3 103 65.0
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 6.8e-29 131.0 137 55.5
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 6.8e-29 131.0 127 61.4
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 8.8e-29 130.6 94 66.0
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 8.8e-29 130.6 94 66.0
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 8.8e-29 130.6 127 59.1
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 1.5e-28 129.8 94 66.0
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 2.0e-28 129.4 92 64.1
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 2.6e-28 129.0 94 66.0
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 2.6e-28 129.0 158 50.0
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 3.4e-28 128.6 90 67.8
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 3.4e-28 128.6 94 66.0
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 3.4e-28 128.6 94 66.0
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 3.4e-28 128.6 76 76.3
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 4.4e-28 128.3 94 64.9
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 4.4e-28 128.3 94 66.0
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 4.4e-28 128.3 94 66.0
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 5.7e-28 127.9 106 58.5
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 7.5e-28 127.5 80 77.5
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 9.8e-28 127.1 94 63.8
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 9.8e-28 127.1 94 63.8
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.3e-27 126.7 75 77.3
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 1.3e-27 126.7 90 70.0
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 1.7e-27 126.3 74 78.4
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 1.7e-27 126.3 122 54.9
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 1.7e-27 126.3 123 53.7
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.7e-27 126.3 104 65.4
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 2.2e-27 125.9 97 69.1
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 2.8e-27 125.6 90 67.8
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 2.8e-27 125.6 72 77.8
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 4.9e-27 124.8 94 66.0
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 6.3e-27 124.4 132 51.5
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 8.3e-27 124.0 98 64.3
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 8.3e-27 124.0 116 62.1
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 8.3e-27 124.0 73 78.1
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 1.1e-26 123.6 92 66.3
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 1.4e-26 123.2 82 70.7
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 2.4e-26 122.5 102 62.7
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 2.4e-26 122.5 109 58.7
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 4.1e-26 121.7 117 59.0
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 4.1e-26 121.7 100 66.0
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 5.4e-26 121.3 92 65.2
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 9.2e-26 120.6 81 67.9
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 7.8e-25 117.5 102 61.8
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 2.3e-24 115.9 134 50.0
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 6.6e-24 114.4 102 60.8
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 6.6e-24 114.4 109 55.0
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 2.6e-20 102.4 76 57.9
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 5.7e-20 101.3 104 55.8
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 1.7e-19 99.8 94 55.3
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.7e-19 99.8 80 61.2
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 2.2e-19 99.4 55 80.0
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 1.1e-18 97.1 79 51.9
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 1.1e-18 97.1 115 46.1
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 1.8e-18 96.3 109 53.2
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 9.2e-18 94.0 64 62.5
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 1.1e-15 87.0 70 47.1
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 6.8e-13 77.8 70 58.6
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 2.2e-11 72.8 69 55.1
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 1.4e-10 70.1 38 78.9
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 3.0e-08 62.4 34 76.5
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 1.6e-06 56.6 80 42.5
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 4.7e-06 55.1 50 58.0
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 6.2e-06 54.7 34 73.5
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 6.2e-06 54.7 66 50.0
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 8.1e-06 54.3 62 50.0


User provided reference genes

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