Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 5.3e-23 110.2 55 100.0
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 3.1e-15 84.3 45 93.3
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 4.0e-15 84.0 45 93.3
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 4.0e-15 84.0 45 93.3
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 5.3e-15 83.6 45 88.9
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 2.0e-14 81.6 45 91.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 3.4e-14 80.9 45 86.7
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 4.5e-14 80.5 45 86.7
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 4.5e-14 80.5 45 86.7
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 4.5e-14 80.5 45 86.7
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 5.8e-14 80.1 45 88.9
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 5.8e-14 80.1 45 88.9
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 7.6e-14 79.7 45 86.7
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 7.6e-14 79.7 45 86.7
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 7.6e-14 79.7 45 86.7
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 7.6e-14 79.7 45 86.7
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.0e-13 79.3 45 86.7
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.0e-13 79.3 45 84.4
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.3e-13 79.0 44 88.6
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 1.3e-13 79.0 45 86.7
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.7e-13 78.6 45 84.4
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.7e-13 78.6 45 84.4
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.7e-13 78.6 45 84.4
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.7e-13 78.6 45 84.4
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.7e-13 78.6 45 84.4
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.7e-13 78.6 45 84.4
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 2.2e-13 78.2 45 82.2
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.2e-13 78.2 45 86.7
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 2.2e-13 78.2 45 86.7
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.9e-13 77.8 45 86.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.9e-13 77.8 45 84.4
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 2.9e-13 77.8 45 82.2
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 3.8e-13 77.4 45 82.2
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 3.8e-13 77.4 45 84.4
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 5.0e-13 77.0 45 84.4
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 5.0e-13 77.0 45 84.4
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 5.0e-13 77.0 44 81.8
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 5.0e-13 77.0 45 84.4
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 6.5e-13 76.6 45 84.4
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 6.5e-13 76.6 57 73.7
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 8.4e-13 76.3 45 82.2
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.1e-12 75.9 45 84.4
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 82.2
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 80.0
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 80.0
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 82.2
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 82.2
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 80.0
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 82.2
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 82.2
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.4e-12 75.5 45 82.2
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 80.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.9e-12 75.1 45 82.2
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.5e-12 74.7 45 82.2
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 2.5e-12 74.7 45 80.0
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 3.2e-12 74.3 45 80.0
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 3.2e-12 74.3 45 82.2
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 3.2e-12 74.3 45 80.0
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 4.2e-12 73.9 45 80.0
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 4.2e-12 73.9 45 80.0
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 5.5e-12 73.6 45 80.0
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 5.5e-12 73.6 45 80.0
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 7.1e-12 73.2 47 80.9
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 7.1e-12 73.2 45 82.2
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 9.3e-12 72.8 45 80.0
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.3e-12 72.8 45 77.8
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.3e-12 72.8 45 77.8
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.3e-12 72.8 45 77.8
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 1.2e-11 72.4 45 77.8
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-11 72.4 45 77.8
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-11 72.4 45 77.8
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-11 72.4 45 77.8
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.6e-11 72.0 45 80.0
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.6e-11 72.0 45 77.8
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.6e-11 72.0 45 77.8
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.6e-11 72.0 45 80.0
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.1e-11 71.6 45 77.8
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.7e-11 71.2 45 75.6
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.7e-11 71.2 45 75.6
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.7e-11 71.2 45 77.8
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 2.7e-11 71.2 45 75.6
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 6.1e-11 70.1 45 75.6
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 6.1e-11 70.1 45 75.6
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 7.9e-11 69.7 45 73.3
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.0e-10 69.3 42 78.6
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 1.3e-10 68.9 43 76.7
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.3e-10 68.9 42 76.2
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 3.9e-10 67.4 45 73.3
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 5.1e-10 67.0 45 66.7
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.1e-09 65.9 36 86.1
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.5e-09 65.5 45 71.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.5e-09 64.7 45 73.3
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 6.3e-08 60.1 36 77.8
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-07 59.3 45 64.4
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.1e-07 59.3 45 64.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 6.9e-07 56.6 42 66.7
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.0e-07 56.2 46 60.9
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.0e-07 56.2 46 60.9
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.6e-06 54.7 46 58.7
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 2.6e-06 54.7 45 66.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 4.5e-06 53.9 37 64.9


User provided reference genes

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