Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 9.6e-251 870.5 796 100.0
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.3e-138 498.0 780 72.8
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 1.3e-138 498.0 644 75.0
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.5e-137 493.8 687 67.5
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.2e-137 493.0 687 67.4
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 8.7e-135 485.3 655 67.5
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 6.3e-133 479.2 645 66.8
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.2e-131 474.9 672 66.7
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 3.6e-128 463.4 659 66.8
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 5.1e-127 459.5 680 64.9
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 3.3e-126 456.8 674 65.4
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 9.7e-126 455.3 668 65.0
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 8.2e-125 452.2 665 66.2
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.4e-124 450.7 659 63.9
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 5.3e-124 449.5 669 65.2
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 9.1e-124 448.7 672 48.2
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 1.2e-123 448.4 668 63.8
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.7e-122 444.5 671 69.9
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.4e-121 441.4 635 66.0
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 9.4e-121 438.7 669 65.5
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.2e-120 438.3 635 66.5
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 2.1e-120 437.6 663 69.4
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 4.7e-120 436.4 662 66.5
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 4.7e-120 436.4 681 62.0
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.5e-118 431.4 786 66.8
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 4.4e-118 429.9 631 63.4
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 8.2e-117 425.6 635 66.5
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 4.1e-116 423.3 680 63.8
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 7.0e-116 422.5 646 71.1
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 7.7e-115 419.1 646 71.7
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 1.7e-114 417.9 682 63.2
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 7.2e-113 412.5 645 62.8
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.2e-112 411.8 662 51.8
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 4.7e-112 409.8 655 63.7
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 4.7e-112 409.8 653 64.3
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 1.4e-111 408.3 664 49.8
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 5.2e-111 406.4 666 63.4
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 8.8e-111 405.6 642 67.3
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 3.3e-110 403.7 680 62.5
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 1.7e-109 401.4 657 62.9
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 2.2e-109 401.0 682 65.5
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 2.2e-109 401.0 633 64.5
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 8.2e-109 399.1 639 64.0
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 2.4e-108 397.5 672 54.2
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 6.5e-106 389.4 629 51.7
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 2.7e-104 384.0 631 67.5
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 3.0e-103 380.6 668 57.8
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 5.2e-103 379.8 627 47.7
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 1.5e-102 378.3 637 46.8
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 2.0e-102 377.9 636 46.7
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.3e-101 375.2 676 49.1
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 1.7e-101 374.8 656 59.9
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 2.8e-101 374.0 663 58.5
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.1e-100 370.5 618 66.8
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 4.1e-100 370.2 618 66.7
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 9.1e-100 369.0 662 57.1
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.6e-99 368.2 618 66.7
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 2.0e-99 367.9 646 52.6
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 1.7e-98 364.8 647 66.2
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.8e-98 363.6 617 65.5
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 3.8e-98 363.6 295 73.6
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 8.5e-98 362.5 654 59.2
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.6e-96 358.2 629 68.7
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 2.3e-95 354.4 663 39.2
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 1.2e-94 352.1 653 41.7
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 2.6e-94 350.9 635 63.9
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 9.8e-94 349.0 621 59.9
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 2.7e-91 340.9 662 37.5
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 1.7e-90 338.2 636 65.1
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 6.6e-90 336.3 588 79.8
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 2.8e-88 330.9 675 50.2
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 4.7e-88 330.1 667 40.0
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 7.5e-86 322.8 485 49.7
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 1.7e-85 321.6 631 40.9
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 6.3e-85 319.7 565 51.7
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.1e-84 318.9 645 47.3
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 1.1e-84 318.9 674 55.6
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 2.4e-84 317.8 674 48.5
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 4.1e-84 317.0 675 46.1
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.7e-83 314.3 670 60.1
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 1.9e-81 308.1 662 56.2
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 7.3e-81 306.2 294 57.8
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 1.2e-80 305.4 680 55.9
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 2.8e-80 304.3 646 57.4
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 6.1e-80 303.1 160 95.6
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.4e-79 302.0 572 59.8
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 1.2e-78 298.9 627 57.3
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 3.4e-78 297.4 643 63.0
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 2.2e-77 294.7 501 67.1
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 3.2e-76 290.8 652 55.8
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 1.2e-72 278.9 666 54.4
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 1.8e-71 275.0 455 71.9
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 2.3e-71 274.6 667 43.2
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 3.2e-68 264.2 531 67.4
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 4.7e-64 250.4 200 60.0
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 1.6e-59 235.3 295 47.1
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 1.5e-57 228.8 265 50.2
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 4.3e-57 227.3 170 66.5
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 7.3e-57 226.5 537 41.0
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 7.6e-54 216.5 475 49.9
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 1.4e-52 212.2 534 42.3
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 2.7e-51 208.0 205 51.7
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 2.5e-49 201.4 200 50.5
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 4.3e-49 200.7 169 60.9
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 2.9e-45 188.0 199 45.2
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.2e-44 184.1 169 50.9
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 4.2e-44 184.1 338 82.5
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 7.1e-44 183.3 199 48.7
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 4.6e-43 180.6 115 76.5
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 1.6e-40 172.2 115 69.6
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 5.3e-39 167.2 168 50.6
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 3.5e-27 127.9 144 48.6
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 1.1e-20 106.3 199 34.7
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 1.1e-20 106.3 199 34.7
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 1.8e-18 99.0 227 30.8
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 5.7e-17 94.0 51 82.4
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 6.3e-16 90.5 106 42.5
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.1e-15 89.7 105 50.5
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 1.2e-14 86.3 51 78.4
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 1.7e-13 82.4 102 45.1
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 1.9e-12 79.0 46 78.3
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 1.2e-11 76.3 58 56.9
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 2.3e-10 72.0 269 23.4
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 1.1e-09 69.7 95 41.1
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 1.5e-09 69.3 39 79.5
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.5e-09 69.3 243 23.9
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 3.3e-09 68.2 273 23.1
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 7.4e-09 67.0 296 23.0
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 8.2e-08 63.5 278 23.0
SGA_v2.0_scaffold73G24233 Striga asiatica HOM05D000424 ORTHO05D000355 1.1e-07 63.2 288 24.0
DCAR_021804 Daucus carota HOM05D007157 ORTHO05D009045 1.8e-07 62.4 227 23.3
Duzib213G0619 Durio zibethinus HOM05D000424 ORTHO05D000355 2.4e-07 62.0 260 22.7
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 2.4e-07 62.0 293 23.2
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 3.1e-07 61.6 139 34.5
Gohir.D04G075000 Gossypium hirsutum HOM05D007157 ORTHO05D009045 5.3e-07 60.8 290 21.0
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 5.3e-07 60.8 232 22.8
TWI38G2061 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 6.9e-07 60.5 262 21.0
Lj1g0003427 Lotus japonicus HOM05D000424 ORTHO05D000355 1.2e-06 59.7 296 22.6
BcaC01g01238 Brassica carinata HOM05D006232 ORTHO05D007746 2.0e-06 58.9 48 60.4
Gorai.012G084300 Gossypium raimondii HOM05D007157 ORTHO05D009045 2.0e-06 58.9 290 21.4
Manes.15G089400 Manihot esculenta HOM05D000424 ORTHO05D000355 2.0e-06 58.9 245 22.4
Aa31LG8G14820 Aethionema arabicum HOM05D006556 ORTHO05D008146 2.6e-06 58.5 267 23.6
PGR083G2098 Punica granatum HOM05D000424 ORTHO05D000355 2.6e-06 58.5 239 23.0
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 3.4e-06 58.2 111 29.7
TPR.G7961 Trifolium pratense HOM05D000424 ORTHO05D000355 3.4e-06 58.2 268 23.1
AT2G17525 Arabidopsis thaliana HOM05D006556 ORTHO05D008146 4.5e-06 57.8 253 23.7
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 4.5e-06 57.8 200 23.0
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 4.5e-06 57.8 109 36.7
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 5.9e-06 57.4 262 21.4
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 7.7e-06 57.0 293 21.5


User provided reference genes

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