Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.1e-150 536.6 270 100.0
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 2.4e-100 369.4 270 68.5
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.8e-84 316.6 270 61.5
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 5.5e-81 305.1 271 58.7
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 4.6e-80 302.0 271 58.3
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.5e-78 296.2 213 69.5
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.5e-78 296.2 275 59.6
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 7.4e-78 294.7 273 60.4
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 9.7e-78 294.3 262 61.8
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 3.1e-76 289.3 275 58.9
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 5.3e-76 288.5 272 60.7
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 5.9e-75 285.0 277 58.1
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 1.3e-74 283.9 216 69.4
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 1.7e-74 283.5 278 56.8
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.2e-74 283.1 238 66.0
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 3.8e-74 282.3 268 58.2
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 3.2e-73 279.3 281 57.7
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 1.2e-72 277.3 272 57.0
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.6e-72 276.9 210 65.2
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 1.6e-72 276.9 271 55.7
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.1e-72 276.6 243 60.9
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 2.7e-72 276.2 217 65.0
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 4.7e-72 275.4 272 55.1
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 6.1e-72 275.0 227 63.4
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.3e-71 273.1 211 64.9
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.9e-71 272.3 217 64.5
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.5e-70 270.4 178 76.4
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 4.4e-70 268.9 281 53.7
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 4.4e-70 268.9 191 69.1
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 5.7e-70 268.5 271 53.1
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 5.7e-70 268.5 269 57.2
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.4e-70 268.1 191 68.6
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.4e-70 268.1 191 69.1
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 7.4e-70 268.1 267 55.4
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 3.7e-69 265.8 267 53.6
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 4.8e-69 265.4 192 68.8
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 4.8e-69 265.4 271 55.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 4.8e-69 265.4 280 53.9
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 4.8e-69 265.4 281 55.2
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 1.1e-68 264.2 204 65.2
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.1e-68 264.2 273 55.7
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 1.4e-68 263.8 264 54.9
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 1.8e-68 263.5 243 57.2
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 5.3e-68 261.9 274 52.2
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 9.1e-68 261.2 271 52.0
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.5e-67 260.4 202 65.3
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.5e-67 260.4 203 65.5
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 1.5e-67 260.4 211 64.0
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 2.0e-67 260.0 274 52.9
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 3.5e-67 259.2 271 51.3
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 4.5e-67 258.8 214 61.7
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 7.7e-67 258.1 212 64.2
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 7.7e-67 258.1 275 51.6
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.0e-66 257.7 210 61.0
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 6.5e-66 255.0 255 54.9
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 8.5e-66 254.6 211 60.2
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 2.5e-65 253.1 200 62.0
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 2.5e-65 253.1 237 54.9
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 4.2e-65 252.3 209 62.7
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 5.5e-65 251.9 202 59.9
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 1.2e-64 250.8 224 58.0
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 2.7e-64 249.6 194 63.4
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 4.7e-64 248.8 208 62.0
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 4.7e-64 248.8 192 64.1
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 8.0e-64 248.1 295 49.8
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.4e-63 247.3 204 62.7
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 2.3e-63 246.5 214 61.2
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 2.3e-63 246.5 211 62.6
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 2.3e-63 246.5 192 63.5
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 6.7e-63 245.0 210 60.0
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.1e-62 244.2 224 58.5
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 1.1e-62 244.2 275 49.8
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 1.5e-62 243.8 212 56.6
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 2.0e-62 243.4 212 60.4
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 5.7e-62 241.9 216 61.1
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 1.7e-61 240.4 214 57.5
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.7e-61 240.4 203 60.1
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 4.8e-61 238.8 209 58.4
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 4.8e-61 238.8 190 63.7
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 4.1e-60 235.7 198 60.1
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 4.1e-60 235.7 214 56.5
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 5.3e-60 235.3 209 56.5
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 9.1e-60 234.6 209 56.5
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.5e-59 232.6 269 47.6
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 3.5e-59 232.6 196 58.2
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 4.5e-59 232.3 241 53.5
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 5.9e-59 231.9 225 52.4
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 1.0e-58 231.1 209 55.5
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.7e-58 230.3 224 55.4
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 1.7e-58 230.3 272 48.9
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 6.1e-56 221.9 167 65.9
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 4.0e-55 219.2 287 49.8
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 9.8e-54 214.5 148 70.9
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 9.8e-54 214.5 307 44.3
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 8.3e-53 211.5 154 71.4
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 7.7e-51 204.9 225 50.2
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 7.7e-51 204.9 142 71.8
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.5e-50 201.8 144 71.5
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.5e-49 200.7 144 67.4
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 2.5e-49 199.9 153 68.0
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 8.8e-47 191.4 177 57.6
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.0e-46 190.3 154 61.0
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 5.7e-46 188.7 225 44.9
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 7.5e-46 188.3 125 72.0
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 1.4e-44 184.1 127 69.3
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.4e-44 184.1 202 51.0
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 2.9e-42 176.4 206 47.1
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 2.5e-41 173.3 201 47.3
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.8e-39 167.2 154 61.0
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 5.4e-36 155.6 115 66.1
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 1.6e-35 154.1 202 44.1
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 3.3e-33 146.4 195 42.1
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 4.0e-23 112.8 192 35.9
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 4.0e-23 112.8 192 35.9
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 4.4e-22 109.4 96 52.1
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 2.9e-21 106.7 82 67.1
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 4.9e-21 105.9 123 42.3
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 6.4e-21 105.5 112 52.7
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 8.1e-16 88.6 225 29.8
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 2.3e-15 87.0 161 35.4
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 2.3e-15 87.0 100 50.0
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 1.6e-11 74.3 103 42.7
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 2.4e-07 60.5 87 41.4


User provided reference genes

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