Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.0e-154 550.1 280 100.0
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.0e-109 400.6 282 75.2
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 5.8e-102 374.8 280 70.7
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.6e-91 339.0 281 64.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.8e-88 329.3 281 61.9
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.7e-88 328.9 281 63.7
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.9e-85 319.3 289 60.2
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.8e-85 318.9 281 61.9
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 5.0e-85 318.5 319 56.7
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 8.5e-85 317.8 283 61.1
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 2.5e-84 316.2 284 64.1
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.2e-84 315.8 259 64.1
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.7e-83 312.8 283 60.8
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.6e-83 312.4 280 60.4
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.4e-82 310.5 284 60.9
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.0e-81 306.6 289 58.8
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.7e-80 302.4 290 59.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 6.3e-80 301.6 289 57.4
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 4.1e-79 298.9 283 58.7
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 4.1e-79 298.9 283 58.7
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.6e-78 296.2 287 59.6
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 5.0e-77 292.0 288 57.3
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.5e-76 290.4 288 56.6
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.1e-75 286.6 288 56.6
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.7e-75 286.2 286 58.4
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.3e-74 283.1 288 55.6
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 3.9e-74 282.3 287 58.5
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.6e-73 279.6 289 57.1
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.3e-73 279.3 294 55.1
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 4.4e-73 278.9 288 56.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.4e-71 273.1 293 52.6
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.1e-71 272.7 283 57.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.0e-71 271.6 280 56.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 7.0e-71 271.6 289 53.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.0e-71 271.6 333 48.9
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 9.1e-71 271.2 282 53.2
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.3e-69 267.3 286 54.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 5.0e-69 265.4 284 53.9
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 8.5e-69 264.6 283 53.4
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.5e-68 263.8 283 53.4
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.5e-68 263.8 252 58.3
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.5e-68 263.1 286 54.5
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.2e-68 262.3 379 44.1
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 4.2e-68 262.3 285 54.4
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 9.4e-68 261.2 320 50.0
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 2.7e-67 259.6 283 53.7
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.7e-67 259.6 287 51.2
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.1e-67 258.5 255 57.6
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.8e-66 256.9 320 50.0
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 4.0e-66 255.8 282 52.1
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.8e-66 254.6 394 42.4
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.4e-65 252.7 255 56.5
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 3.7e-64 249.2 255 56.5
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.1e-63 247.7 282 53.2
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.0e-63 245.0 269 53.5
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.6e-62 243.8 219 63.5
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 7.7e-62 241.5 201 64.2
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 7.7e-62 241.5 308 51.3
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 4.2e-60 235.7 283 49.5
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 7.2e-60 235.0 281 49.5
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.6e-59 232.6 295 51.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 8.0e-59 231.5 258 53.5
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.0e-58 231.1 274 52.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.8e-58 230.3 310 46.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.8e-58 230.3 310 46.8
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 2.3e-58 229.9 297 46.5
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 3.0e-58 229.6 280 49.6
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 3.0e-58 229.6 373 42.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.0e-58 229.6 294 48.6
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 6.8e-58 228.4 208 63.5
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.0e-57 226.9 270 53.0
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.7e-57 225.3 281 49.5
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.3e-56 224.2 295 47.1
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.3e-56 224.2 304 49.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.3e-56 224.2 283 50.2
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 6.3e-56 221.9 235 54.5
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.4e-55 219.9 226 53.1
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 5.4e-55 218.8 286 50.3
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 7.0e-55 218.4 239 50.2
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 9.1e-55 218.0 247 51.8
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.0e-54 216.9 286 49.7
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 2.0e-54 216.9 235 53.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 4.5e-54 215.7 196 60.2
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 5.9e-54 215.3 283 47.3
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.0e-53 214.5 201 58.7
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.3e-53 214.2 235 52.8
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.3e-53 213.4 284 47.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 3.8e-53 212.6 259 50.2
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.8e-53 212.6 293 46.1
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.6e-53 211.8 227 55.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.5e-52 210.7 285 48.1
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.5e-52 210.7 295 45.8
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.2e-52 209.1 317 44.8
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 5.5e-52 208.8 295 46.4
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.1e-51 206.8 255 49.0
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.8e-50 203.8 206 58.7
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.3e-50 203.4 165 63.0
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 4.0e-50 202.6 280 51.4
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.5e-49 200.7 293 46.1
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.5e-49 200.7 350 41.1
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 2.6e-49 199.9 293 46.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 2.6e-49 199.9 293 46.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 7.5e-49 198.4 293 45.7
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 3.7e-48 196.1 298 43.6
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 8.3e-48 194.9 293 45.4
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.4e-47 194.1 220 50.0
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 9.2e-47 191.4 323 42.4
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 5.0e-45 185.7 162 64.8
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 9.5e-44 181.4 299 43.1
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.6e-43 179.5 227 48.5
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.0e-42 177.9 284 43.7
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 5.2e-42 175.6 294 43.2
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 8.9e-42 174.9 302 41.4
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.0e-41 173.7 207 49.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 5.8e-41 172.2 165 60.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 4.1e-39 166.0 296 40.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-38 164.5 297 41.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 3.5e-38 162.9 280 40.7
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.8e-38 161.8 348 35.9
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.9e-36 157.1 273 41.8
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.9e-36 157.1 312 35.9
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 3.3e-36 156.4 228 45.6
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 7.3e-36 155.2 299 37.8
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 9.5e-36 154.8 245 44.1
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 4.7e-35 152.5 181 52.5
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.6e-30 137.5 297 39.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.5e-28 131.0 316 35.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.1e-26 124.8 237 39.2
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.3e-26 123.6 257 38.9
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 4.0e-26 122.9 208 44.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 4.0e-26 122.9 310 37.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.8e-26 122.1 208 44.2
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 3.4e-25 119.8 102 59.8
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.7e-24 117.5 255 36.9
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.1e-23 112.8 120 52.5
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.6e-22 110.9 210 39.0
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 7.8e-22 108.6 186 43.5
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 3.9e-21 106.3 267 34.5
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.1e-20 104.8 103 58.3
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.3e-16 91.3 88 56.8
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 5.4e-15 85.9 129 46.5
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 6.2e-11 72.4 99 42.4
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 2.4e-10 70.5 83 45.8
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 4.0e-10 69.7 69 56.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 5.8e-09 65.9 111 43.2
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 9.9e-09 65.1 72 55.6
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 6.4e-08 62.4 65 44.6
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.1e-06 57.4 119 39.5
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 6.0e-06 55.8 53 54.7
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 7.9e-06 55.5 210 30.5


User provided reference genes

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