Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14361 Nelumbo nucifera HOM05D003560 ORTHO05D004500 8.9e-31 136.3 71 100.0
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 8.6e-18 93.2 68 76.5
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 6.2e-16 87.0 67 70.1
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 1.8e-15 85.5 67 70.1
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 2.3e-15 85.1 67 68.7
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 4.0e-15 84.3 50 86.0
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 5.2e-15 84.0 67 67.2
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 5.2e-15 84.0 68 64.7
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 6.8e-15 83.6 67 65.7
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 6.8e-15 83.6 67 65.7
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 8.9e-15 83.2 50 82.0
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 1.2e-14 82.8 67 65.7
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 1.2e-14 82.8 53 79.2
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 1.2e-14 82.8 67 67.2
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 2.0e-14 82.0 68 61.8
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 2.6e-14 81.6 50 80.0
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 2.6e-14 81.6 67 62.7
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 2.6e-14 81.6 67 65.7
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 2.6e-14 81.6 67 61.2
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 2.6e-14 81.6 67 64.2
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 64.2
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 62.7
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 62.7
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 64.2
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 64.2
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 64.2
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 64.2
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 64.2
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 64.2
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 3.4e-14 81.3 67 65.7
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 3.4e-14 81.3 50 80.0
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 62.7
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
Hma1.2p1_0222F.1_g093876 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
Hma1.2p1_0222F.1_g093910 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.4e-14 80.9 67 64.2
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 5.8e-14 80.5 67 62.7
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 5.8e-14 80.5 50 82.0
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 5.8e-14 80.5 67 65.7
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 7.5e-14 80.1 50 78.0
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 7.5e-14 80.1 50 76.0
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 7.5e-14 80.1 67 62.7
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 7.5e-14 80.1 69 60.9
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 7.5e-14 80.1 67 62.7
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 9.9e-14 79.7 67 64.2
MBI14_g08698_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 9.9e-14 79.7 67 62.7
MBI14_g31376_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 9.9e-14 79.7 67 62.7
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 9.9e-14 79.7 67 62.7
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 9.9e-14 79.7 67 62.7
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 9.9e-14 79.7 50 80.0
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 1.3e-13 79.3 67 62.7
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 1.3e-13 79.3 67 62.7
THA.LOC104803909 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 1.3e-13 79.3 67 64.2
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 1.7e-13 79.0 50 80.0
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 1.7e-13 79.0 67 62.7
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 1.7e-13 79.0 50 78.0
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 2.2e-13 78.6 67 64.2
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 2.2e-13 78.6 67 59.7
GSVIVG01023682001 Vitis vinifera HOM05D003560 ORTHO05D004500 2.2e-13 78.6 67 61.2
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 2.9e-13 78.2 67 62.7
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 2.9e-13 78.2 67 61.2
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 2.9e-13 78.2 67 62.7
Ah.14g084380 Amaranthus hybridus HOM05D003560 ORTHO05D004500 3.7e-13 77.8 67 59.7
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 3.7e-13 77.8 67 64.2
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 3.7e-13 77.8 69 60.9
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 4.9e-13 77.4 67 62.7
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 4.9e-13 77.4 67 62.7
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 4.9e-13 77.4 67 61.2
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 4.9e-13 77.4 67 59.7
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 4.9e-13 77.4 67 59.7
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 4.9e-13 77.4 67 59.7
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 4.9e-13 77.4 67 62.7
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 6.4e-13 77.0 67 59.7
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 6.4e-13 77.0 50 76.0
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 6.4e-13 77.0 50 78.0
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 6.4e-13 77.0 67 59.7
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 6.4e-13 77.0 67 59.7
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 8.3e-13 76.6 67 62.7
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 8.3e-13 76.6 67 62.7
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 8.3e-13 76.6 67 62.7
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 8.3e-13 76.6 67 62.7
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 8.3e-13 76.6 67 61.2
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 1.1e-12 76.3 67 62.7
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 1.1e-12 76.3 50 74.0
ECA236G1776 Erigeron canadensis HOM05D003560 ORTHO05D004500 1.4e-12 75.9 50 74.0
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 1.4e-12 75.9 67 55.2
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 1.9e-12 75.5 67 61.2
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 1.9e-12 75.5 67 61.2
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 1.9e-12 75.5 67 61.2
arahy.Tifrunner.gnm1.ann1.IP23DV Arachis hypogaea HOM05D003560 ORTHO05D004500 1.9e-12 75.5 67 61.2
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 1.9e-12 75.5 50 76.0
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 1.9e-12 75.5 67 59.7
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 1.9e-12 75.5 67 59.7
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 1.9e-12 75.5 67 61.2
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 2.4e-12 75.1 67 61.2
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 2.4e-12 75.1 67 61.2
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 2.4e-12 75.1 67 61.2
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 3.2e-12 74.7 67 61.2
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 3.2e-12 74.7 67 61.2
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 3.2e-12 74.7 67 59.7
CDE05G3326 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 3.2e-12 74.7 67 59.7
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 3.2e-12 74.7 67 58.2
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 4.1e-12 74.3 67 59.7
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 4.1e-12 74.3 67 56.7
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 4.1e-12 74.3 67 59.7
BcaC09g51868 Brassica carinata HOM05D003560 ORTHO05D004500 5.4e-12 73.9 67 59.7
A01p07380 Brassica napus HOM05D003560 ORTHO05D004500 5.4e-12 73.9 67 59.7
C01p08140 Brassica napus HOM05D003560 ORTHO05D004500 5.4e-12 73.9 67 59.7
BolC1t00801H Brassica oleracea HOM05D003560 ORTHO05D004500 5.4e-12 73.9 67 59.7
BraA01t00687Z Brassica rapa HOM05D003560 ORTHO05D004500 5.4e-12 73.9 67 59.7
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 7.1e-12 73.6 67 59.7
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 9.2e-12 73.2 67 59.7
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 9.2e-12 73.2 67 59.7
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 9.2e-12 73.2 67 59.7
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 9.2e-12 73.2 50 70.0
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 9.2e-12 73.2 67 56.7
HanXRQChr05g0141571 Helianthus annuus HOM05D003560 ORTHO05D004500 1.2e-11 72.8 67 55.2
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 1.6e-11 72.4 67 52.2
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 1.6e-11 72.4 50 70.0
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 1.6e-11 72.4 67 56.7
unitig_37.g12751 Utricularia gibba HOM05D003560 ORTHO05D004500 1.6e-11 72.4 67 55.2
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 2.1e-11 72.0 69 58.0
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 2.7e-11 71.6 69 58.0
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 2.7e-11 71.6 69 58.0
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 2.7e-11 71.6 67 53.7
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 3.5e-11 71.2 50 68.0
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 3.5e-11 71.2 67 55.2
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 3.5e-11 71.2 67 55.2
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 3.5e-11 71.2 50 68.0
SMO301G0012 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 3.5e-11 71.2 67 56.7
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 3.5e-11 71.2 52 69.2
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 4.6e-11 70.9 67 55.2
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 4.6e-11 70.9 67 55.2
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 4.6e-11 70.9 69 58.0
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 4.6e-11 70.9 50 68.0
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 6.0e-11 70.5 69 56.5
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 6.0e-11 70.5 50 70.0
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 6.0e-11 70.5 67 56.7
Pp3c22_15890 Physcomitrium patens HOM05D003560 ORTHO05D004500 7.8e-11 70.1 52 67.3
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 1.0e-10 69.7 52 65.4
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 1.7e-10 68.9 50 64.0
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 2.3e-10 68.6 50 64.0
Mapoly0041s0089 Marchantia polymorpha HOM05D003560 ORTHO05D004500 5.1e-10 67.4 69 56.5
Os02g0179800 Oryza sativa ssp. japonica HOM05D003560 ORTHO05D004500 8.6e-10 66.6 67 52.2
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 4.3e-09 64.3 67 47.8
SMO361G0185 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 7.3e-09 63.5 50 64.0
SMO361G0456 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 7.3e-09 63.5 50 64.0
AagrBONN_evm.TU.Sc2ySwM_344.4294 Anthoceros agrestis HOM05D003560 ORTHO05D004500 4.0e-07 57.8 53 54.7
Migut.K00302 Erythranthe guttata HOM05D003560 ORTHO05D004500 1.5e-06 55.8 67 40.3


User provided reference genes

Program Settings