Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 2.4e-92 342.0 157 100.0
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 8.5e-50 200.7 148 64.9
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 1.1e-49 200.3 153 60.8
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 3.2e-49 198.7 148 62.2
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 4.2e-49 198.4 149 62.4
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 5.5e-49 198.0 150 63.3
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 2.7e-48 195.7 147 61.2
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 3.6e-48 195.3 147 63.3
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 4.6e-48 194.9 147 63.3
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 4.6e-48 194.9 152 59.2
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 6.1e-48 194.5 149 61.7
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 2.3e-47 192.6 146 63.7
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.0e-47 192.2 149 59.7
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 3.9e-47 191.8 143 60.1
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.9e-47 191.8 149 59.7
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 8.8e-47 190.7 149 59.1
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.1e-46 190.3 149 59.1
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 4.4e-46 188.3 152 58.6
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 7.4e-46 187.6 147 59.9
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 7.4e-46 187.6 151 58.3
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 9.7e-46 187.2 146 58.2
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 9.7e-46 187.2 146 58.9
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 9.7e-46 187.2 146 58.9
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 9.7e-46 187.2 146 58.9
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 2.2e-45 186.0 146 56.8
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 2.2e-45 186.0 146 58.9
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 3.7e-45 185.3 150 58.0
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 4.8e-45 184.9 146 58.2
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 4.8e-45 184.9 145 62.1
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 8.2e-45 184.1 147 55.1
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 8.2e-45 184.1 150 60.0
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 8.2e-45 184.1 148 58.8
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 1.4e-44 183.3 151 59.6
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.4e-44 183.3 152 56.6
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 2.4e-44 182.6 145 56.6
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 4.1e-44 181.8 146 56.2
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.3e-44 181.4 145 57.2
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 5.3e-44 181.4 150 59.3
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 6.9e-44 181.0 149 58.4
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 6.9e-44 181.0 153 55.6
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 6.9e-44 181.0 145 56.6
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 9.1e-44 180.6 151 57.6
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 9.1e-44 180.6 151 57.6
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 1.2e-43 180.3 143 58.7
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.2e-43 180.3 145 57.9
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 1.2e-43 180.3 150 59.3
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 2.0e-43 179.5 144 56.2
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 2.6e-43 179.1 151 57.6
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 2.6e-43 179.1 144 59.0
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 2.6e-43 179.1 144 59.0
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 2.6e-43 179.1 151 56.3
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 2.6e-43 179.1 125 64.8
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 3.4e-43 178.7 148 56.8
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 3.4e-43 178.7 145 57.2
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 3.4e-43 178.7 145 57.2
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 4.5e-43 178.3 121 63.6
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 5.9e-43 177.9 144 58.3
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 7.7e-43 177.6 147 58.5
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 7.7e-43 177.6 147 58.5
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 7.7e-43 177.6 144 59.0
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 7.7e-43 177.6 156 55.8
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 7.7e-43 177.6 147 57.8
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 1.0e-42 177.2 153 56.2
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 1.0e-42 177.2 148 56.8
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 1.0e-42 177.2 151 55.6
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.0e-42 177.2 151 55.6
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 1.0e-42 177.2 144 55.6
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.3e-42 176.8 120 63.3
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.3e-42 176.8 117 65.0
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.3e-42 176.8 151 55.6
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 2.2e-42 176.0 144 58.3
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 2.2e-42 176.0 144 58.3
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 2.2e-42 176.0 144 58.3
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.2e-42 176.0 146 56.2
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 2.2e-42 176.0 154 55.8
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 2.9e-42 175.6 149 57.0
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 3.8e-42 175.3 145 57.2
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 3.8e-42 175.3 144 58.3
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 3.8e-42 175.3 144 57.6
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 3.8e-42 175.3 150 52.0
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 5.0e-42 174.9 147 57.8
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 1.1e-41 173.7 144 56.9
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 1.1e-41 173.7 145 57.2
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 1.4e-41 173.3 121 65.3
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 1.9e-41 172.9 147 57.1
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 1.9e-41 172.9 156 53.8
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.9e-41 172.9 145 55.9
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 2.5e-41 172.6 145 55.9
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 3.2e-41 172.2 149 56.4
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 5.5e-41 171.4 144 59.0
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 7.2e-41 171.0 146 56.8
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 7.2e-41 171.0 145 55.2
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 1.2e-40 170.2 150 58.0
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 1.6e-40 169.9 123 64.2
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 2.7e-40 169.1 144 57.6
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 2.7e-40 169.1 144 57.6
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 3.6e-40 168.7 147 53.7
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 4.7e-40 168.3 147 52.4
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 6.1e-40 167.9 119 63.9
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 7.9e-40 167.5 143 54.5
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 7.9e-40 167.5 147 56.5
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 1.0e-39 167.2 117 64.1
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 2.3e-39 166.0 151 54.3
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 3.9e-39 165.2 121 64.5
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 5.2e-39 164.9 140 55.0
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 5.2e-39 164.9 162 53.1
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 6.7e-39 164.5 116 67.2
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 6.7e-39 164.5 152 53.3
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 1.1e-38 163.7 123 61.0
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 1.1e-38 163.7 154 53.2
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 1.5e-38 163.3 145 57.2
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 1.5e-38 163.3 116 62.9
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 2.0e-38 162.9 116 62.1
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 4.4e-38 161.8 126 57.9
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 9.7e-38 160.6 116 62.9
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 1.3e-37 160.2 151 49.7
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 3.7e-37 158.7 123 58.5
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 4.8e-37 158.3 148 54.1
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 8.2e-37 157.5 129 55.0
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 1.8e-36 156.4 118 61.9
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 7.0e-36 154.5 145 50.3
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.6e-35 153.3 116 58.6
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.6e-35 153.3 116 58.6
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.5e-35 152.1 116 57.8
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 7.7e-35 151.0 151 54.3
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.3e-34 150.2 144 51.4
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.3e-34 150.2 144 51.4
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 1.7e-34 149.8 116 56.9
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 1.7e-34 149.8 138 54.3
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.8e-34 148.7 119 58.0
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 4.2e-33 145.2 117 59.0
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.0e-31 140.6 72 88.9
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 1.4e-31 140.2 117 50.4
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 5.3e-28 128.3 122 47.5
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 6.5e-26 121.3 146 44.5
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 6.5e-26 121.3 118 43.2
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 1.2e-24 117.1 117 48.7
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 4.0e-23 112.1 77 67.5
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 1.0e-18 97.4 99 50.5
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 9.5e-17 90.9 100 49.0
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 9.5e-17 90.9 100 49.0
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 2.8e-16 89.4 115 40.0
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 1.0e-15 87.4 108 42.6
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 5.7e-14 81.6 98 45.9
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 5.7e-14 81.6 95 48.4
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 3.7e-13 79.0 75 52.0
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 1.0e-10 70.9 60 58.3
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 3.8e-10 68.9 78 42.3
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 8.6e-10 67.8 66 53.0
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 4.3e-09 65.5 60 55.0


User provided reference genes

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