Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.2e-127 458.0 222 100.0
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 8.7e-109 397.1 225 85.8
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 82.7
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 6.7e-101 370.9 228 78.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 4.8e-99 364.8 225 80.0
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.7e-96 356.3 224 78.1
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.4e-95 353.2 225 78.2
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.4e-95 353.2 225 76.0
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 76.9
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 76.4
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.2e-95 352.1 225 76.4
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 3.2e-95 352.1 225 76.4
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 5.5e-95 351.3 225 76.9
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-94 350.1 225 74.2
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 4.6e-94 348.2 225 75.1
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.9e-94 347.4 225 76.0
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.9e-94 347.4 225 76.0
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.9e-94 347.4 225 74.2
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 75.6
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 76.0
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 75.1
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 3.0e-93 345.5 225 74.2
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 5.1e-93 344.7 225 75.6
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 5.1e-93 344.7 223 74.4
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.7e-93 344.4 226 77.0
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.7e-93 344.4 226 77.0
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.1e-92 343.6 227 74.4
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.1e-92 343.6 225 73.8
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.3e-92 342.0 225 74.7
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 5.7e-92 341.3 225 75.6
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 7.4e-92 340.9 225 73.3
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 7.4e-92 340.9 225 74.7
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 7.4e-92 340.9 225 74.2
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 9.7e-92 340.5 225 75.1
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 73.3
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 73.3
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 72.0
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 72.0
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 74.2
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 75.6
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-91 339.0 225 72.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 6.3e-91 337.8 225 72.0
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.1e-90 337.0 227 72.2
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 73.8
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 71.6
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 72.0
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 1.8e-90 336.3 224 74.1
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.8e-90 336.3 227 72.2
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 1.8e-90 336.3 225 71.6
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 1.8e-90 336.3 226 74.3
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.8e-90 336.3 225 75.6
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 72.9
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 3.1e-90 335.5 225 72.9
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 5.3e-90 334.7 225 73.8
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 2.0e-89 332.8 225 73.3
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 2.0e-89 332.8 226 72.1
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 4.5e-89 331.6 279 62.4
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 7.7e-89 330.9 225 73.8
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 72.0
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.0e-88 330.5 260 65.4
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.3e-88 330.1 225 71.6
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 2.9e-88 328.9 225 72.0
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 2.9e-88 328.9 225 71.1
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 3.8e-88 328.6 225 72.9
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 71.6
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 4.7e-86 321.6 197 79.2
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.1e-84 317.0 226 69.9
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.7e-83 313.2 266 60.9
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 6.3e-83 311.2 232 66.4
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.1e-82 310.5 225 68.0
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.1e-82 310.5 225 67.1
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 3.1e-82 308.9 225 67.1
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 7.0e-82 307.8 197 76.1
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 9.1e-82 307.4 228 68.0
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.2e-81 307.0 228 67.1
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.2e-81 307.0 225 65.8
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.6e-81 305.8 225 67.6
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 4.5e-81 305.1 225 67.1
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 5.9e-81 304.7 225 64.9
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 7.7e-81 304.3 225 69.3
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 7.7e-81 304.3 225 66.7
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.0e-80 303.9 225 65.8
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.0e-80 303.9 225 66.2
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.3e-80 303.5 225 64.9
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.7e-80 303.1 225 68.0
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 5.0e-80 301.6 225 68.0
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 5.0e-80 301.6 225 66.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 8.5e-80 300.8 225 67.6
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.1e-79 300.4 225 66.7
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.1e-79 300.4 208 72.1
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.9e-79 299.7 225 66.7
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.5e-79 299.3 225 66.2
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 3.2e-79 298.9 225 66.2
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 3.2e-79 298.9 225 66.2
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 4.2e-79 298.5 225 65.8
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 7.2e-79 297.7 225 65.8
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 2.1e-78 296.2 225 65.8
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 4.7e-78 295.0 227 66.5
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 4.7e-78 295.0 227 67.0
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 4.7e-78 295.0 225 65.8
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.0e-76 289.7 226 64.6
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 4.4e-76 288.5 228 65.4
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.1e-74 283.9 225 62.7
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.8e-74 283.1 225 62.7
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 3.1e-74 282.3 225 62.7
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 5.3e-74 281.6 225 65.3
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.6e-73 280.0 225 62.7
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 7.7e-73 277.7 210 64.3
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 8.5e-72 274.2 225 63.6
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 8.5e-72 274.2 217 63.1
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 8.0e-70 267.7 177 73.4
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.3e-67 260.4 225 57.8
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.7e-67 260.0 176 73.3
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 7.0e-66 254.6 222 60.8
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.0e-65 253.1 222 60.8
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.1e-63 247.3 252 55.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.1e-63 247.3 252 55.6
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 2.6e-60 236.1 250 54.4
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 4.1e-58 228.8 243 51.4
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 4.5e-57 225.3 229 55.5
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.3e-56 223.0 225 52.0
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 2.5e-55 219.5 225 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.6e-54 216.9 225 51.6
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 2.5e-47 193.0 162 61.7
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-46 189.5 122 72.1
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 7.5e-44 181.4 224 45.1
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 2.2e-43 179.9 228 45.6
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 8.3e-43 177.9 208 44.7
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.6e-38 163.7 100 76.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.7e-38 162.2 100 75.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 5.4e-34 148.7 130 58.5
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 7.8e-33 144.8 149 53.7
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 5.1e-32 142.1 188 45.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.1e-24 115.5 72 73.6
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 4.7e-22 109.0 91 58.2
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.5e-20 104.0 102 52.9
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.6e-20 103.2 65 72.3
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 3.2e-18 96.3 119 45.4
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.0e-16 89.7 76 60.5
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-15 87.0 51 80.4
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-15 87.0 51 80.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.3e-15 85.1 51 78.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.6e-14 84.0 52 76.9
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.6e-14 84.0 51 76.5
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.1e-14 83.6 69 65.2
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 6.9e-13 78.6 223 30.9
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.4e-10 70.9 51 66.7
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 2.3e-08 63.5 64 53.1
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.7e-08 62.0 51 66.7
SEGI_41622 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 4.8e-06 55.8 50 54.0
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 8.1e-06 55.1 56 51.8


User provided reference genes

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