Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14320 Nelumbo nucifera HOM05D000732 ORTHO05D001037 3.0e-54 214.9 110 100.0
Nn2g15828 Nelumbo nucifera HOM05D000732 ORTHO05D001037 5.6e-16 87.8 117 49.6
CAN.G1361.8 Capsicum annuum HOM05D000732 ORTHO05D001037 9.9e-13 77.0 115 42.6
TAR633G0810 Trochodendron aralioides HOM05D000732 ORTHO05D001037 9.9e-13 77.0 117 43.6
Solyc01g081640.4 Solanum lycopersicum HOM05D000732 ORTHO05D001037 3.8e-12 75.1 115 41.7
Sopen01g033190 Solanum pennellii HOM05D000732 ORTHO05D001037 3.8e-12 75.1 115 41.7
Dinv43506 Davidia involucrata HOM05D000732 ORTHO05D001037 4.9e-12 74.7 115 41.7
arahy.Tifrunner.gnm1.ann1.P16UST Arachis hypogaea HOM05D000732 ORTHO05D001037 6.4e-12 74.3 69 62.3
Cfa010698 Carpinus fangiana HOM05D000732 ORTHO05D001037 1.4e-11 73.2 116 41.4
Oeu041508.1 Olea europaea HOM05D000732 ORTHO05D001037 1.9e-11 72.8 115 42.6
Cc02_g26770 Coffea canephora HOM05D000732 ORTHO05D001037 2.4e-11 72.4 115 42.6
Hma1.2p1_0128F.1_g059870 Hydrangea macrophylla HOM05D000732 ORTHO05D001037 4.2e-11 71.6 117 40.2
Haze_03278 Corylus avellana HOM05D000732 ORTHO05D001037 5.4e-11 71.2 116 40.5
GSVIVG01005996001 Vitis vinifera HOM05D000732 ORTHO05D001037 1.2e-10 70.1 117 40.2
PSO339G4027 Papaver somniferum HOM05D000732 ORTHO05D001037 1.6e-10 69.7 121 39.7
PSO384G1576 Papaver somniferum HOM05D000732 ORTHO05D001037 1.6e-10 69.7 121 39.7
Nitab4.5_0000468g0170 Nicotiana tabacum HOM05D000732 ORTHO05D001037 3.5e-10 68.6 135 36.3
Nn2g15915 Nelumbo nucifera HOM05D000732 ORTHO05D001037 4.6e-10 68.2 99 46.5
CANSAT11G0131 Cannabis sativa HOM05D000732 ORTHO05D001037 6.0e-10 67.8 120 36.7
Nitab4.5_0009826g0010 Nicotiana tabacum HOM05D000732 ORTHO05D001037 6.0e-10 67.8 104 41.3
Peaxi162Scf00402g00943 Petunia axillaris HOM05D000732 ORTHO05D001037 7.8e-10 67.4 104 42.3
MBI04_g09727_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D001037 1.3e-09 66.6 116 42.2
Manes.10G153200 Manihot esculenta HOM05D000732 ORTHO05D001037 1.3e-09 66.6 117 38.5
Actinidia21587 Actinidia chinensis HOM05D000732 ORTHO05D001037 3.0e-09 65.5 118 38.1
Cpa.g.c29923.4 Carica papaya HOM05D000732 ORTHO05D001037 3.9e-09 65.1 115 38.3
Lsat_1_v5_gn_1_87481 Lactuca sativa HOM05D000732 ORTHO05D001037 5.1e-09 64.7 117 38.5
SEGI_12761 Sequoiadendron giganteum HOM05D000732 ORTHO05D001037 6.6e-09 64.3 109 39.4
Pp3c2_28590 Physcomitrium patens HOM05D000732 ORTHO05D001037 8.7e-09 63.9 109 38.5
ATR0921G002 Amborella trichopoda HOM05D000732 ORTHO05D001037 1.1e-08 63.5 116 37.9
Oeu034443.3 Olea europaea HOM05D000732 ORTHO05D001037 1.9e-08 62.8 116 38.8
Hund03179 Selenicereus undatus HOM05D000732 ORTHO05D001037 3.3e-08 62.0 116 37.1
TAR362G0289 Trochodendron aralioides HOM05D000732 ORTHO05D001037 4.3e-08 61.6 116 37.9
Pp3c1_210 Physcomitrium patens HOM05D000732 ORTHO05D001037 5.6e-08 61.2 109 39.4
Pp3c7_26930 Physcomitrium patens HOM05D000732 ORTHO05D001037 5.6e-08 61.2 109 38.5
Potri.017G026200 Populus trichocarpa HOM05D000732 ORTHO05D001037 5.6e-08 61.2 116 38.8
CSS0021096 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D001037 7.3e-08 60.8 116 37.1
CSS0031933 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D001037 7.3e-08 60.8 116 37.1
Ciclev10018994m.g Citrus clementina HOM05D000732 ORTHO05D001037 7.3e-08 60.8 116 37.9
HanXRQChr01g0017391 Helianthus annuus HOM05D000732 ORTHO05D001037 7.3e-08 60.8 107 37.4
Pp3c1_38260 Physcomitrium patens HOM05D000732 ORTHO05D001037 7.3e-08 60.8 109 38.5
PGR083G2190 Punica granatum HOM05D000732 ORTHO05D001037 7.3e-08 60.8 116 37.9
Gohir.D02G011900 Gossypium hirsutum HOM05D000732 ORTHO05D001037 9.6e-08 60.5 116 37.9
Gorai.005G015300 Gossypium raimondii HOM05D000732 ORTHO05D001037 9.6e-08 60.5 116 37.9
Manes.11G125500 Manihot esculenta HOM05D000732 ORTHO05D001037 9.6e-08 60.5 116 37.1
Pp3c2_3720 Physcomitrium patens HOM05D000732 ORTHO05D001037 9.6e-08 60.5 109 37.6
Hund12403 Selenicereus undatus HOM05D000732 ORTHO05D001037 9.6e-08 60.5 116 35.3
SGA_v2.0_scaffold322G48601 Striga asiatica HOM05D000732 ORTHO05D001037 9.6e-08 60.5 117 38.5
TWI38G1157 Tripterygium wilfordii HOM05D000732 ORTHO05D001037 9.6e-08 60.5 116 37.1
Ah.13g073720 Amaranthus hybridus HOM05D000732 ORTHO05D001037 1.3e-07 60.1 116 36.2
Haze_08206 Corylus avellana HOM05D000732 ORTHO05D001037 1.3e-07 60.1 121 34.7
Duzib268G0812 Durio zibethinus HOM05D000732 ORTHO05D001037 1.3e-07 60.1 116 37.1
Sabra17G0000900 Salix brachista HOM05D000732 ORTHO05D001037 1.3e-07 60.1 116 37.9
Sabra17G0016000 Salix brachista HOM05D000732 ORTHO05D001037 1.3e-07 60.1 116 37.9
SalBow6G2995 Salvia bowleyana HOM05D000732 ORTHO05D001037 1.3e-07 60.1 116 37.9
MSTRG.22011 Avicennia marina HOM05D000732 ORTHO05D001037 1.6e-07 59.7 109 36.7
CAN.G65.154 Capsicum annuum HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.1
Cpa.g.sc9.321 Carica papaya HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.9
CiPaw.01G095800 Carya illinoinensis HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.1
Gohir.A02G011100 Gossypium hirsutum HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.1
MBI07_g18521_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.1
Solyc06g073110.3 Solanum lycopersicum HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.1
Sopen06g029460 Solanum pennellii HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.1
Thecc.04G174200 Theobroma cacao HOM05D000732 ORTHO05D001037 1.6e-07 59.7 116 37.1
Zm00001eb037300 Zea mays HOM05D000732 ORTHO05D001037 1.6e-07 59.7 109 38.5
EL10Ac3g06015 Beta vulgaris HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 35.3
Cfa015199 Carpinus fangiana HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 36.2
AUR62002353 Chenopodium quinoa HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 35.3
AUR62023831 Chenopodium quinoa HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 35.3
Haze_01450 Corylus avellana HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 36.2
HanXRQChr12g0380281 Helianthus annuus HOM05D000732 ORTHO05D001037 2.1e-07 59.3 109 37.6
Nn7g37579 Nelumbo nucifera HOM05D000732 ORTHO05D001037 2.1e-07 59.3 109 37.6
Nitab4.5_0001586g0200 Nicotiana tabacum HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 36.2
Nitab4.5_0002722g0020 Nicotiana tabacum HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 36.2
Os08g0541500 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D001037 2.1e-07 59.3 109 37.6
QL10p051216 Quercus lobata HOM05D000732 ORTHO05D001037 2.1e-07 59.3 116 36.2
AL1G19190 Arabidopsis lyrata HOM05D000732 ORTHO05D001037 2.8e-07 58.9 116 36.2
MSTRG.24573 Avicennia marina HOM05D000732 ORTHO05D001037 2.8e-07 58.9 116 37.1
CANSAT78G1705 Cannabis sativa HOM05D000732 ORTHO05D001037 2.8e-07 58.9 116 37.1
Carub.0001s0810 Capsella rubella HOM05D000732 ORTHO05D001037 2.8e-07 58.9 116 36.2
Duzib212G0594 Durio zibethinus HOM05D000732 ORTHO05D001037 2.8e-07 58.9 83 47.0
HanXRQChr15g0469171 Helianthus annuus HOM05D000732 ORTHO05D001037 2.8e-07 58.9 116 37.9
Prupe.2G001500 Prunus persica HOM05D000732 ORTHO05D001037 2.8e-07 58.9 124 35.5
Sed0000679 Sechium edule HOM05D000732 ORTHO05D001037 2.8e-07 58.9 116 37.1
BcaNung06266 Brassica carinata HOM05D000732 ORTHO05D001037 3.6e-07 58.5 109 36.7
BolC5t29442H Brassica oleracea HOM05D000732 ORTHO05D001037 3.6e-07 58.5 109 36.7
BraA06t23776Z Brassica rapa HOM05D000732 ORTHO05D001037 3.6e-07 58.5 109 36.7
Duzib151G0684 Durio zibethinus HOM05D000732 ORTHO05D001037 3.6e-07 58.5 116 37.1
Gohir.A10G140000 Gossypium hirsutum HOM05D000732 ORTHO05D001037 3.6e-07 58.5 116 37.1
Gohir.D10G126800 Gossypium hirsutum HOM05D000732 ORTHO05D001037 3.6e-07 58.5 116 37.1
Gorai.011G139700 Gossypium raimondii HOM05D000732 ORTHO05D001037 3.6e-07 58.5 116 37.1
Mapoly0073s0066 Marchantia polymorpha HOM05D000732 ORTHO05D001037 3.6e-07 58.5 109 35.8
Sp1g07400 Schrenkiella parvula HOM05D000732 ORTHO05D001037 3.6e-07 58.5 109 36.7
THA.LOC104805816 Tarenaya hassleriana HOM05D000732 ORTHO05D001037 3.6e-07 58.5 116 37.1
THA.LOC104821115 Tarenaya hassleriana HOM05D000732 ORTHO05D001037 3.6e-07 58.5 116 37.1
Migut.N03096 Erythranthe guttata HOM05D000732 ORTHO05D001037 4.8e-07 58.2 109 36.7
Thhalv10006887m.g Eutrema salsugineum HOM05D000732 ORTHO05D001037 4.8e-07 58.2 109 35.8
Sabra07G0106800 Salix brachista HOM05D000732 ORTHO05D001037 4.8e-07 58.2 116 37.1
Sabra07G0118700 Salix brachista HOM05D000732 ORTHO05D001037 4.8e-07 58.2 116 37.1
Sc13g0006710 Simmondsia chinensis HOM05D000732 ORTHO05D001037 4.8e-07 58.2 116 36.2
SGA_v2.0_scaffold510G52621 Striga asiatica HOM05D000732 ORTHO05D001037 4.8e-07 58.2 105 35.2
AT1G08760 Arabidopsis thaliana HOM05D000732 ORTHO05D001037 6.2e-07 57.8 116 35.3
CARHR008680 Cardamine hirsuta HOM05D000732 ORTHO05D001037 6.2e-07 57.8 116 34.5
Manes.04G047100 Manihot esculenta HOM05D000732 ORTHO05D001037 6.2e-07 57.8 116 36.2
Os09g0516700 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D001037 6.2e-07 57.8 109 36.7
PSO675G8077 Papaver somniferum HOM05D000732 ORTHO05D001037 6.2e-07 57.8 116 37.1
Peaxi162Scf00180g00312 Petunia axillaris HOM05D000732 ORTHO05D001037 6.2e-07 57.8 116 37.1
unitig_18.g30054 Utricularia gibba HOM05D000732 ORTHO05D001037 6.2e-07 57.8 116 36.2
Zm00001eb318630 Zea mays HOM05D000732 ORTHO05D001037 6.2e-07 57.8 109 36.7
Atru.chr11.2716 Acer truncatum HOM05D000732 ORTHO05D001037 8.1e-07 57.4 115 33.9
Aqoxy2G04130 Aquilegia oxysepala HOM05D000732 ORTHO05D001037 8.1e-07 57.4 116 36.2
CiPaw.02G051800 Carya illinoinensis HOM05D000732 ORTHO05D001037 8.1e-07 57.4 116 35.3
ClCG06G000970 Citrullus lanatus HOM05D000732 ORTHO05D001037 8.1e-07 57.4 116 36.2
MELO3C022442.2 Cucumis melo HOM05D000732 ORTHO05D001037 8.1e-07 57.4 116 36.2
CsaV3_6G006820 Cucumis sativus L. HOM05D000732 ORTHO05D001037 8.1e-07 57.4 116 36.2
Hma1.2p1_0324F.1_g125630 Hydrangea macrophylla HOM05D000732 ORTHO05D001037 8.1e-07 57.4 116 36.2
Lj6C108T8 Lonicera japonica HOM05D000732 ORTHO05D001037 8.1e-07 57.4 116 35.3
Sabra09G0016400 Salix brachista HOM05D000732 ORTHO05D001037 8.1e-07 57.4 121 35.5
SEGI_19662 Sequoiadendron giganteum HOM05D000732 ORTHO05D001037 8.1e-07 57.4 109 37.6
Aa31LG2G18700 Aethionema arabicum HOM05D000732 ORTHO05D001037 1.1e-06 57.0 116 36.2
Dinv44159 Davidia involucrata HOM05D000732 ORTHO05D001037 1.1e-06 57.0 116 35.3
Lsat_1_v5_gn_5_71201 Lactuca sativa HOM05D000732 ORTHO05D001037 1.1e-06 57.0 116 36.2
Rhsim09G0021700 Rhododendron simsii HOM05D000732 ORTHO05D001037 1.1e-06 57.0 116 35.3
RhsimUnG0138000 Rhododendron simsii HOM05D000732 ORTHO05D001037 1.1e-06 57.0 116 35.3
Actinidia27087 Actinidia chinensis HOM05D000732 ORTHO05D001037 1.4e-06 56.6 116 35.3
BraA09t41920Z Brassica rapa HOM05D000732 ORTHO05D001037 1.4e-06 56.6 109 35.8
PSO017G4930 Papaver somniferum HOM05D000732 ORTHO05D001037 1.4e-06 56.6 116 37.1
arahy.Tifrunner.gnm1.ann1.F7AVJ6 Arachis hypogaea HOM05D000732 ORTHO05D001037 1.8e-06 56.2 116 37.1
Potri.007G131600 Populus trichocarpa HOM05D000732 ORTHO05D001037 1.8e-06 56.2 116 36.2
Actinidia34579 Actinidia chinensis HOM05D000732 ORTHO05D001037 2.4e-06 55.8 116 35.3
ATR0743G126 Amborella trichopoda HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 37.1
BcaB03g13315 Brassica carinata HOM05D000732 ORTHO05D001037 3.1e-06 55.5 109 35.8
BcaC07g41927 Brassica carinata HOM05D000732 ORTHO05D001037 3.1e-06 55.5 109 35.8
Eucgr.H00341 Eucalyptus grandis HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
FvH4_1g23460 Fragaria vesca HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
FAN19G1687 Fragaria x ananassa HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
FAN26G2746 Fragaria x ananassa HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
FAN28G0453 Fragaria x ananassa HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
MD04G1045400 Malus domestica HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
MD13G1256500 Malus domestica HOM05D000732 ORTHO05D001037 3.1e-06 55.5 109 35.8
Peaxi162Scf00504g00098 Petunia axillaris HOM05D000732 ORTHO05D001037 3.1e-06 55.5 117 35.0
Prupe.1G198600 Prunus persica HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
RcHm_v2.0_Chr2g0118831 Rosa chinensis HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 35.3
TWI15G0939 Tripterygium wilfordii HOM05D000732 ORTHO05D001037 3.1e-06 55.5 116 37.9
BolC8t52511H Brassica oleracea HOM05D000732 ORTHO05D001037 4.0e-06 55.1 109 34.9
Dinv05084 Davidia involucrata HOM05D000732 ORTHO05D001037 4.0e-06 55.1 116 34.5
ECA233G5137 Erigeron canadensis HOM05D000732 ORTHO05D001037 4.0e-06 55.1 117 35.0
Lj3A42T21 Lonicera japonica HOM05D000732 ORTHO05D001037 4.0e-06 55.1 116 34.5
Lj3C50T6 Lonicera japonica HOM05D000732 ORTHO05D001037 4.0e-06 55.1 116 34.5
unitig_578.g16256 Utricularia gibba HOM05D000732 ORTHO05D001037 4.0e-06 55.1 116 35.3
Glyma.13G345500 Glycine max HOM05D000732 ORTHO05D001037 5.3e-06 54.7 117 36.8
TPR.G6594 Trifolium pratense HOM05D000732 ORTHO05D001037 5.3e-06 54.7 116 36.2
vmacro00615 Vaccinium macrocarpon HOM05D000732 ORTHO05D001037 5.3e-06 54.7 111 34.2
VMungo1080G0037 Vigna mungo HOM05D000732 ORTHO05D001037 5.3e-06 54.7 116 37.1
GSVIVG01010850001 Vitis vinifera HOM05D000732 ORTHO05D001037 5.3e-06 54.7 116 33.6
Glyma.15G028800 Glycine max HOM05D000732 ORTHO05D001037 6.9e-06 54.3 117 36.8
Lalb_Chr22g0352061 Lupinus albus HOM05D000732 ORTHO05D001037 6.9e-06 54.3 116 36.2
Psat5g290360 Pisum sativum HOM05D000732 ORTHO05D001037 6.9e-06 54.3 116 37.1
vmacro00678 Vaccinium macrocarpon HOM05D000732 ORTHO05D001037 6.9e-06 54.3 116 33.6
FAN23G1643 Fragaria x ananassa HOM05D000732 ORTHO05D001037 9.0e-06 53.9 116 34.5
HanXRQChr13g0419851 Helianthus annuus HOM05D000732 ORTHO05D001037 9.0e-06 53.9 116 37.1
Lj3g0019803 Lotus japonicus HOM05D000732 ORTHO05D001037 9.0e-06 53.9 116 36.2
Medtr2g099095 Medicago truncatula HOM05D000732 ORTHO05D001037 9.0e-06 53.9 117 36.8
Oeu020492.1 Olea europaea HOM05D000732 ORTHO05D001037 9.0e-06 53.9 116 34.5
SMO351G0407 Selaginella moellendorffii HOM05D000732 ORTHO05D001037 9.0e-06 53.9 109 35.8
VMungo1127G0028 Vigna mungo HOM05D000732 ORTHO05D001037 9.0e-06 53.9 109 35.8
Zm00001eb102800 Zea mays HOM05D000732 ORTHO05D001037 9.0e-06 53.9 109 37.6


User provided reference genes

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