Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.4e-153 546.2 267 100.0
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.6e-128 463.0 309 75.7
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 4.0e-116 421.8 310 68.7
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 4.0e-116 421.8 309 68.6
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 2.0e-115 419.5 309 68.3
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 2.2e-114 416.0 309 67.6
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.4e-113 413.3 309 68.6
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 5.4e-113 411.4 306 66.3
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 3.5e-112 408.7 309 65.7
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 1.1e-110 403.7 310 65.8
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.2e-109 400.2 309 65.7
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.2e-109 400.2 309 65.7
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 2.8e-109 399.1 306 65.4
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 8.0e-109 397.5 306 65.0
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.0e-108 397.1 296 66.9
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 1.4e-108 396.7 309 63.4
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 2.3e-108 396.0 309 66.0
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.8e-108 394.4 309 65.4
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 8.9e-108 394.0 305 63.9
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 8.9e-108 394.0 309 62.5
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 3.4e-107 392.1 308 62.7
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 5.8e-107 391.3 306 64.4
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 5.8e-107 391.3 309 63.1
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 7.5e-107 391.0 310 63.5
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 7.5e-107 391.0 310 64.8
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 1.3e-106 390.2 306 64.4
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 1.7e-106 389.8 310 63.2
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.9e-106 389.0 310 62.9
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 4.9e-106 388.3 306 64.1
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 8.3e-106 387.5 309 63.4
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 8.3e-106 387.5 310 62.6
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 1.1e-105 387.1 304 64.5
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.4e-105 386.7 310 62.6
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.9e-105 386.3 309 60.8
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 1.9e-105 386.3 315 63.2
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.9e-105 386.3 310 61.6
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 2.4e-105 386.0 309 61.5
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.4e-105 386.0 310 62.6
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.4e-105 386.0 312 63.5
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 2.4e-105 386.0 302 64.6
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 5.4e-105 384.8 310 62.6
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 7.0e-105 384.4 306 64.1
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 9.2e-105 384.0 310 62.3
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 1.2e-104 383.6 313 62.9
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.2e-104 383.6 311 62.4
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 1.6e-104 383.3 307 63.2
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 1.6e-104 383.3 310 61.6
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.6e-104 383.3 304 62.8
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 2.7e-104 382.5 305 62.6
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 3.5e-104 382.1 305 61.6
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 6.0e-104 381.3 309 60.5
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 7.8e-104 380.9 309 61.2
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.3e-103 380.2 317 59.6
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 2.3e-103 379.4 305 61.6
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 2.3e-103 379.4 310 62.9
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 5.0e-103 378.3 309 61.2
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 1.1e-102 377.1 309 60.8
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 2.5e-102 375.9 308 62.0
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 7.3e-102 374.4 311 61.4
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 7.3e-102 374.4 311 61.4
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 1.2e-101 373.6 325 57.5
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.1e-101 372.9 310 60.6
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 2.1e-101 372.9 310 60.6
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.8e-101 372.5 331 58.9
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 4.7e-101 371.7 310 60.6
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 4.7e-101 371.7 305 62.3
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 8.1e-101 370.9 307 61.2
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.1e-101 370.9 309 60.8
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 1.4e-100 370.2 310 60.6
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 3.1e-100 369.0 305 61.3
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 3.1e-100 369.0 304 61.8
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 3.1e-100 369.0 291 64.9
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 5.2e-100 368.2 305 61.6
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 6.8e-100 367.9 305 61.0
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 8.9e-100 367.5 304 61.5
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 8.9e-100 367.5 305 61.3
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.2e-99 367.1 305 60.3
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 5.8e-99 364.8 311 60.1
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 5.8e-99 364.8 387 51.2
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 9.8e-99 364.0 311 59.8
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 9.8e-99 364.0 305 59.7
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.3e-98 360.9 310 58.1
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.1e-97 360.5 310 57.7
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.4e-97 360.1 310 58.4
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.9e-97 359.8 305 58.4
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 1.9e-97 359.8 350 54.0
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 2.7e-96 355.9 307 60.9
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 2.7e-96 355.9 306 60.5
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.5e-96 355.5 305 57.7
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 6.0e-96 354.8 328 54.9
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 3.9e-95 352.1 326 56.4
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.9e-94 349.7 289 61.2
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.4e-92 343.6 311 57.6
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.4e-92 343.6 305 57.0
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 2.0e-91 339.7 272 61.4
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 2.4e-89 332.8 301 56.8
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 3.6e-85 318.9 307 53.7
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 6.8e-84 314.7 265 61.9
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 6.4e-82 308.1 240 65.0
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.4e-81 307.0 285 55.8
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 9.3e-81 304.3 245 62.4
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 9.6e-78 294.3 305 52.1
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 3.6e-77 292.4 251 61.8
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 2.0e-75 286.6 308 50.3
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.0e-71 274.2 241 57.7
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 4.9e-66 255.4 306 47.1
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.6e-64 248.8 292 47.3
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 7.9e-64 248.1 302 44.4
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 1.8e-63 246.9 209 60.3
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 3.3e-62 242.7 228 55.7
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.9e-57 226.9 301 42.5
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.6e-54 214.5 144 75.0
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.8e-53 213.0 144 75.7
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 2.9e-50 203.0 292 39.7
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 8.5e-42 174.9 319 37.3
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 7.2e-41 171.8 290 35.5
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.5e-38 163.3 143 58.7
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 4.3e-38 162.5 123 60.2
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 9.7e-38 161.4 180 46.7
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 1.4e-36 157.5 143 54.5
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 2.3e-31 140.2 95 66.3
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 8.8e-31 138.3 96 65.6
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 4.4e-30 136.0 82 75.6
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.2e-27 127.9 100 63.0
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.4e-20 103.6 67 70.1
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.2e-18 97.1 70 65.7
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.5e-17 94.4 62 71.0
Hma1.2p1_0381F.1_g139970 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.8e-07 60.8 33 78.8
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.5e-06 57.8 25 88.0


User provided reference genes

Program Settings