Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.6e-280 968.0 467 100.0
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 2.9e-231 805.1 452 85.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.6e-229 798.1 451 84.5
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.1e-227 793.1 448 84.2
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.0e-227 792.3 445 83.8
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 8.2e-226 786.9 450 82.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.1e-225 786.6 457 81.8
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.1e-225 783.5 453 81.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.1e-225 783.5 453 81.5
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 7.7e-224 780.4 453 81.5
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.3e-223 779.6 454 81.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.9e-223 778.5 451 80.0
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.0e-223 777.7 451 80.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.0e-223 777.7 449 81.7
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 8.5e-223 776.9 449 80.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 5.5e-222 774.2 453 80.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.6e-221 772.7 470 78.7
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 6.1e-221 770.8 451 80.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.4e-220 769.6 451 79.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.6e-219 765.4 451 79.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 7.5e-219 763.8 465 77.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.8e-218 761.9 451 78.9
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 4.8e-218 761.1 450 80.0
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 4.1e-217 758.1 456 78.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 5.3e-217 757.7 445 80.0
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.5e-216 755.0 461 76.6
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.5e-214 749.6 444 79.7
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 3.2e-214 748.4 452 78.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 4.7e-213 744.6 452 76.8
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 8.0e-213 743.8 437 80.5
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 8.0e-213 743.8 454 75.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 6.8e-212 740.7 449 77.3
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.5e-211 739.6 449 77.5
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.5e-211 739.6 453 77.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.0e-211 739.2 452 76.3
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-210 736.5 464 76.5
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 8.3e-210 733.8 459 75.4
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 3.1e-209 731.9 454 76.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 5.4e-209 731.1 428 80.4
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.2e-208 729.9 454 74.7
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.6e-208 729.6 449 77.7
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.5e-208 728.4 465 75.9
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.3e-207 726.5 440 78.4
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-207 725.7 435 79.5
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.3e-207 725.7 427 79.2
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.3e-207 725.7 427 79.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.9e-206 722.6 427 79.9
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.5e-206 722.2 448 75.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.5e-206 722.2 449 75.3
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.2e-206 720.7 427 78.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 7.2e-206 720.7 427 78.7
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.2e-205 719.9 455 76.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.2e-205 719.9 427 78.9
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.6e-205 719.5 456 74.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 8.0e-205 717.2 453 74.0
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.0e-204 716.8 456 76.1
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.3e-204 715.7 450 75.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 6.8e-204 714.1 450 74.9
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.2e-203 713.4 442 77.1
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.4e-203 711.8 450 74.7
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 8.3e-202 707.2 453 74.0
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.8e-201 706.1 451 75.6
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 9.2e-201 703.7 443 75.4
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 2.3e-199 699.1 449 73.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.0e-199 698.0 453 75.1
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 6.6e-199 697.6 419 78.8
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-197 693.3 465 71.6
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.6e-197 691.8 388 83.5
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 6.1e-197 691.0 452 71.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.0e-197 690.6 455 72.7
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 2.0e-195 686.0 453 72.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.6e-195 685.6 408 79.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 9.8e-195 683.7 451 72.5
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 6.4e-194 681.0 448 72.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.3e-191 673.3 450 72.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 2.3e-191 672.5 449 71.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 7.3e-190 667.5 462 69.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.1e-189 666.0 486 68.7
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.1e-188 662.1 461 69.6
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 2.2e-186 656.0 443 68.8
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 3.7e-186 655.2 449 66.1
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 8.3e-186 654.1 493 65.3
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 7.8e-184 647.5 446 67.3
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.3e-183 646.7 450 66.4
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 3.0e-183 645.6 457 70.5
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.9e-183 645.2 450 66.7
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 8.6e-183 644.0 461 67.7
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.5e-182 642.5 450 66.7
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.3e-182 642.1 450 65.6
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 3.3e-182 642.1 459 65.1
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 4.3e-182 641.7 459 65.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 5.6e-182 641.3 457 65.0
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.2e-181 640.2 362 82.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.8e-181 639.0 378 80.4
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 4.7e-181 638.3 459 64.9
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 4.7e-181 638.3 459 64.9
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-180 637.1 458 70.3
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.1e-180 637.1 455 67.5
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.3e-180 636.0 454 65.2
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-178 629.8 460 65.0
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.3e-175 620.2 389 74.6
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-172 609.0 456 62.5
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.3e-170 603.6 447 64.0
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.7e-170 603.2 532 59.0
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.6e-168 596.7 380 76.3
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.5e-168 595.5 469 64.4
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.6e-168 595.1 435 67.4
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.1e-165 586.3 403 67.2
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.8e-164 583.2 413 69.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.0e-163 579.7 484 58.9
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.4e-161 572.8 394 66.5
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.9e-158 563.1 445 59.1
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.5e-152 542.3 433 58.4
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 4.6e-152 542.0 437 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.0e-151 540.8 457 58.4
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.5e-150 536.2 343 74.6
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-138 497.3 427 58.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 5.0e-138 495.4 406 60.6
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.5e-137 493.0 468 54.7
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 3.7e-133 479.2 290 78.3
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.0e-126 456.8 290 74.1
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.7e-122 443.7 325 68.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.2e-122 443.4 347 62.5
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.0e-122 442.2 347 62.0
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.2e-121 439.5 456 55.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.6e-118 429.9 412 55.8
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.1e-116 422.9 272 73.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.4e-111 407.5 384 49.7
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.1e-96 357.1 204 79.4
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.5e-94 350.9 412 45.4
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 6.3e-93 345.5 432 43.1
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 6.6e-90 335.5 214 76.2
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 3.3e-89 333.2 281 61.2
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.6e-75 287.7 171 80.1
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 3.9e-58 229.9 194 58.8
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.9e-57 227.6 119 84.0
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.6e-54 217.2 185 60.5
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-52 211.8 223 55.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.8e-48 197.2 157 61.8
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.6e-43 181.4 241 44.8
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.6e-43 179.9 239 45.2
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-41 174.5 109 77.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.4e-39 168.3 234 40.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 5.3e-39 166.4 197 47.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.9e-36 157.9 85 83.5
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 3.9e-34 150.2 94 74.5
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.6e-30 137.5 239 38.5
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.2e-24 115.9 85 64.7
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 9.0e-23 112.5 71 74.6
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 9.0e-23 112.5 62 80.6
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 4.2e-20 103.6 122 44.3
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-18 98.6 70 67.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.0e-15 85.9 80 57.5
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.4e-12 78.6 64 67.2
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.5e-09 67.8 33 87.9
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.2e-06 58.9 42 61.9


User provided reference genes

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