Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.6e-17 90.1 45 100.0
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.6e-09 65.1 41 78.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.6e-09 63.5 41 80.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.6e-09 63.5 41 80.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 6.1e-09 63.2 41 78.0
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.0e-08 62.4 41 75.6
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.0e-08 62.4 41 75.6
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 1.3e-08 62.0 41 78.0
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.3e-08 62.0 41 75.6
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.8e-08 61.6 41 75.6
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.8e-08 61.6 41 75.6
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.8e-08 61.6 41 75.6
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 1.8e-08 61.6 41 75.6
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.8e-08 61.6 41 75.6
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.3e-08 61.2 41 75.6
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 2.3e-08 61.2 41 75.6
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 2.3e-08 61.2 41 75.6
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 2.3e-08 61.2 41 73.2
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 2.3e-08 61.2 41 73.2
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 2.3e-08 61.2 41 75.6
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 3.0e-08 60.8 41 75.6
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.0e-08 60.8 41 75.6
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 3.0e-08 60.8 41 75.6
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 3.0e-08 60.8 41 75.6
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 3.0e-08 60.8 41 75.6
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 3.0e-08 60.8 41 75.6
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 3.0e-08 60.8 43 72.1
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.9e-08 60.5 41 73.2
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 3.9e-08 60.5 41 75.6
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.9e-08 60.5 41 73.2
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.9e-08 60.5 41 73.2
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.9e-08 60.5 41 75.6
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 5.1e-08 60.1 41 75.6
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 5.1e-08 60.1 41 73.2
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 5.1e-08 60.1 41 73.2
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.1e-08 60.1 41 73.2
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 5.1e-08 60.1 41 73.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 5.1e-08 60.1 41 73.2
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 5.1e-08 60.1 41 75.6
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 75.6
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 70.7
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 70.7
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 73.2
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 73.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 73.2
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 70.7
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 73.2
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.7e-08 59.7 41 75.6
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 8.7e-08 59.3 41 70.7
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 8.7e-08 59.3 41 70.7
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 8.7e-08 59.3 41 73.2
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 8.7e-08 59.3 42 73.8
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 8.7e-08 59.3 40 75.0
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 8.7e-08 59.3 41 73.2
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 68.3
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 70.7
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.1e-07 58.9 40 75.0
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 70.7
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 70.7
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 70.7
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.1e-07 58.9 41 73.2
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.5e-07 58.5 41 73.2
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.5e-07 58.5 41 70.7
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.9e-07 58.2 41 70.7
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.9e-07 58.2 41 73.2
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.9e-07 58.2 41 73.2
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.9e-07 58.2 41 70.7
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.9e-07 58.2 41 70.7
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.9e-07 58.2 40 72.5
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.9e-07 58.2 42 71.4
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.9e-07 58.2 41 70.7
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.5e-07 57.8 41 70.7
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.5e-07 57.8 42 69.0
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 2.5e-07 57.8 41 70.7
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.5e-07 57.8 41 70.7
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.5e-07 57.8 41 70.7
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 3.3e-07 57.4 44 65.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.3e-07 57.4 41 70.7
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.3e-07 57.4 41 73.2
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 4.3e-07 57.0 41 68.3
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 5.7e-07 56.6 40 72.5
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.7e-07 56.6 41 68.3
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.7e-07 56.6 41 68.3
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.7e-07 56.6 41 68.3
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 5.7e-07 56.6 41 68.3
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 5.7e-07 56.6 41 70.7
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 5.7e-07 56.6 41 73.2
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 7.4e-07 56.2 41 70.7
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-06 55.5 41 70.7
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.3e-06 55.5 41 70.7
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.3e-06 55.5 41 70.7
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.3e-06 55.5 41 70.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.3e-06 55.5 41 68.3
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.3e-06 55.5 40 67.5
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.6e-06 55.1 41 70.7
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-06 55.1 41 70.7
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.6e-06 55.1 41 70.7
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.6e-06 55.1 41 70.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 2.2e-06 54.7 41 65.9
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 2.8e-06 54.3 40 72.5
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 2.8e-06 54.3 42 64.3
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 3.7e-06 53.9 40 65.0
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 3.7e-06 53.9 40 67.5
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.7e-06 53.9 41 65.9
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 4.8e-06 53.5 41 68.3
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 4.8e-06 53.5 41 63.4
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 4.8e-06 53.5 41 65.9
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 6.3e-06 53.1 40 65.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 6.3e-06 53.1 41 63.4


User provided reference genes

Program Settings