Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.5e-55 219.2 104 100.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 6.1e-12 74.3 34 97.1
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 6.7e-11 70.9 34 91.2
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 6.7e-11 70.9 34 91.2
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 6.7e-11 70.9 34 91.2
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 6.7e-11 70.9 34 91.2
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 6.7e-11 70.9 34 91.2
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 8.8e-11 70.5 34 88.2
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.1e-10 70.1 34 91.2
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-10 70.1 34 91.2
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-10 70.1 34 91.2
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.5e-10 69.7 34 88.2
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.5e-10 69.7 34 88.2
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.5e-10 69.7 34 88.2
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.5e-10 69.7 34 88.2
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.5e-10 69.7 34 88.2
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 2.5e-10 68.9 37 83.8
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 3.3e-10 68.6 34 88.2
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 3.3e-10 68.6 34 88.2
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 3.3e-10 68.6 34 88.2
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 3.3e-10 68.6 34 88.2
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.3e-10 68.2 34 88.2
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 4.3e-10 68.2 34 85.3
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.7e-10 67.8 34 88.2
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.7e-10 67.8 34 88.2
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.7e-10 67.8 34 88.2
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 7.4e-10 67.4 34 85.3
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.4e-10 67.4 34 85.3
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.3e-09 66.6 34 88.2
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.3e-09 66.6 32 84.4
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.3e-09 66.6 32 87.5
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.3e-09 66.6 32 87.5
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.7e-09 66.2 34 82.4
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.7e-09 66.2 34 82.4
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-09 66.2 34 85.3
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 2.2e-09 65.9 34 85.3
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.2e-09 65.9 34 85.3
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.2e-09 65.9 34 85.3
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.8e-09 65.5 32 84.4
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.8e-09 65.5 32 84.4
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.8e-09 65.5 32 84.4
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.8e-09 65.5 34 85.3
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 2.8e-09 65.5 32 87.5
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 2.8e-09 65.5 34 85.3
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 2.8e-09 65.5 34 85.3
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.7e-09 65.1 34 82.4
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.7e-09 65.1 34 82.4
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.7e-09 65.1 34 82.4
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.7e-09 65.1 34 82.4
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 3.7e-09 65.1 36 77.8
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 3.7e-09 65.1 36 77.8
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.7e-09 65.1 37 78.4
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.7e-09 65.1 34 82.4
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 4.8e-09 64.7 35 80.0
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.8e-09 64.7 34 79.4
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.3e-09 64.3 34 85.3
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 6.3e-09 64.3 36 77.8
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 6.3e-09 64.3 34 82.4
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 6.3e-09 64.3 32 84.4
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 6.3e-09 64.3 37 75.7
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 6.3e-09 64.3 34 82.4
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 6.3e-09 64.3 34 82.4
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 8.2e-09 63.9 34 79.4
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.2e-09 63.9 34 79.4
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 8.2e-09 63.9 34 79.4
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.1e-08 63.5 32 84.4
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.1e-08 63.5 32 84.4
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.1e-08 63.5 34 79.4
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.4e-08 63.2 32 84.4
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.4e-08 63.2 34 82.4
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.4e-08 63.2 34 79.4
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.4e-08 63.2 32 84.4
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.4e-08 62.4 32 81.2
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.4e-08 62.4 32 81.2
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.4e-08 62.4 34 82.4
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 2.4e-08 62.4 34 76.5
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 3.1e-08 62.0 32 81.2
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 3.1e-08 62.0 32 81.2
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 3.1e-08 62.0 34 76.5
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 3.1e-08 62.0 34 79.4
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.1e-08 62.0 37 75.7
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.1e-08 62.0 32 81.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.1e-08 61.6 32 81.2
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 6.9e-08 60.8 34 82.4
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 6.9e-08 60.8 34 82.4
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 6.9e-08 60.8 37 75.7
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 6.9e-08 60.8 37 75.7
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 6.9e-08 60.8 37 75.7
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 6.9e-08 60.8 37 75.7
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 6.9e-08 60.8 37 75.7
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.9e-08 60.8 37 75.7
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 6.9e-08 60.8 32 75.0
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 9.1e-08 60.5 32 78.1
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 9.1e-08 60.5 34 76.5
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.2e-07 60.1 34 79.4
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.2e-07 60.1 34 79.4
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.2e-07 60.1 32 81.2
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.2e-07 60.1 32 81.2
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.5e-07 59.7 32 75.0
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.5e-07 59.7 32 81.2
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.5e-07 59.7 37 70.3
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.0e-07 59.3 34 73.5
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.0e-07 59.3 32 78.1
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 2.0e-07 59.3 34 73.5
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.6e-07 58.9 37 73.0
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.6e-07 58.9 32 78.1
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-07 58.9 33 72.7
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.6e-07 58.9 34 76.5
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 3.4e-07 58.5 34 76.5
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 3.4e-07 58.5 34 76.5
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.4e-07 58.5 32 75.0
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 3.4e-07 58.5 34 76.5
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 3.4e-07 58.5 34 76.5
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.4e-07 58.5 37 73.0
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.4e-07 58.5 32 75.0
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.5e-07 58.2 37 70.3
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 4.5e-07 58.2 37 70.3
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 4.5e-07 58.2 34 73.5
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 4.5e-07 58.2 33 75.8
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 5.9e-07 57.8 32 71.9
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.0e-06 57.0 32 78.1
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.7e-06 56.2 34 76.5
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.8e-06 55.1 29 75.9
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.8e-06 55.1 62 50.0
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 8.5e-06 53.9 34 67.6
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.5e-06 53.9 44 61.4
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 8.5e-06 53.9 34 64.7


User provided reference genes

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