Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 0.0e+00 1350.1 710 100.0
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.5e-231 806.6 681 61.8
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.6e-196 690.3 689 51.7
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 3.2e-181 639.4 622 52.1
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 6.7e-179 631.7 701 50.4
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 3.3e-178 629.4 656 54.6
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.9e-174 616.3 700 50.3
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 6.5e-174 615.1 698 49.0
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.1e-173 614.4 653 49.8
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 1.2e-172 610.9 638 52.4
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.0e-170 603.6 644 49.8
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 6.3e-169 598.6 675 49.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.9e-165 587.0 615 52.8
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 6.8e-163 578.6 711 46.1
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.2e-161 573.5 651 49.0
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 4.8e-161 572.4 690 47.2
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 8.3e-161 571.6 646 51.2
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.4e-160 570.9 802 44.0
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.4e-160 568.9 619 47.0
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.2e-159 567.8 611 47.6
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.6e-159 567.4 611 47.8
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 5.5e-157 558.9 702 47.9
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.6e-156 557.4 764 44.2
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.4e-155 554.3 843 41.3
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 3.0e-155 553.1 619 46.7
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 2.6e-154 550.1 610 49.2
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 1.3e-153 547.7 778 42.5
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.8e-153 546.6 835 40.5
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 8.3e-153 545.0 661 49.5
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-152 544.7 619 47.7
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 4.1e-152 542.7 844 40.2
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 7.0e-152 542.0 616 45.8
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 1.2e-151 541.2 638 47.0
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 2.7e-151 540.0 601 48.1
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 3.5e-151 539.7 615 49.6
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 4.5e-151 539.3 598 48.5
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 5.9e-151 538.9 618 46.6
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 5.9e-151 538.9 597 47.6
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 5.9e-151 538.9 810 38.6
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.0e-150 538.1 615 45.5
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 1.3e-150 537.7 783 38.7
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 2.3e-150 537.0 601 47.8
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 2.3e-150 537.0 601 47.8
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 2.9e-150 536.6 600 47.0
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.8e-150 536.2 606 48.0
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 8.6e-150 535.0 619 46.5
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.6e-150 535.0 782 39.1
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.5e-149 534.3 618 46.8
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.9e-149 533.9 653 45.5
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 7.3e-149 531.9 655 45.3
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 9.5e-149 531.6 600 47.0
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 9.5e-149 531.6 632 44.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.1e-148 528.9 871 41.1
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 8.9e-147 525.0 657 43.7
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 2.6e-146 523.5 673 48.1
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 5.7e-146 522.3 672 45.7
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 2.9e-145 520.0 727 39.2
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 4.9e-145 519.2 626 47.3
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.4e-144 517.7 689 42.5
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 5.4e-144 515.8 638 45.1
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 4.6e-143 512.7 617 44.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.1e-141 508.1 810 38.9
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 2.8e-140 503.4 766 39.2
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 5.2e-139 499.2 777 38.2
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 1.7e-137 494.2 645 43.7
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.7e-137 494.2 663 45.9
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 4.9e-137 492.7 631 47.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.4e-136 491.1 679 42.3
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.4e-136 490.3 779 41.3
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 2.4e-136 490.3 720 38.8
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 4.1e-136 489.6 684 39.3
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 9.2e-136 488.4 667 43.2
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.6e-135 487.6 718 39.7
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.6e-135 487.6 718 39.7
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 6.0e-135 485.7 825 36.4
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 6.6e-134 482.3 667 42.9
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 8.6e-134 481.9 847 35.3
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 7.3e-133 478.8 627 43.1
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 9.5e-133 478.4 668 44.6
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 6.2e-132 475.7 626 43.0
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 8.1e-132 475.3 768 37.9
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.1e-131 473.4 848 37.7
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 5.2e-131 472.6 818 38.3
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.3e-129 468.0 844 35.2
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.9e-129 466.8 812 35.8
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 4.9e-129 466.1 692 39.6
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 6.4e-129 465.7 689 40.1
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 6.4e-129 465.7 705 44.4
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 8.3e-129 465.3 660 40.8
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.6e-127 461.1 778 37.9
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.1e-127 460.7 679 43.2
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.0e-126 458.4 494 50.2
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.6e-126 455.3 730 37.4
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.2e-119 434.9 889 33.3
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 4.0e-115 419.9 675 38.7
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 7.6e-114 415.6 835 33.1
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 3.2e-112 410.2 946 31.3
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 9.3e-112 408.7 598 38.3
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-109 401.7 674 37.1
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 2.1e-108 397.5 388 50.8
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 9.9e-106 388.7 471 46.7
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 6.4e-105 386.0 704 40.2
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.1e-104 385.2 766 38.4
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 3.2e-104 383.6 588 38.9
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 7.6e-98 362.5 287 57.5
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.5e-93 347.4 404 47.0
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 4.3e-93 346.7 457 45.1
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.8e-90 336.3 291 53.3
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 4.2e-88 330.1 249 59.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 6.5e-81 306.2 213 64.8
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 9.4e-80 302.4 517 36.2
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.0e-74 284.6 573 33.2
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 7.7e-74 282.7 516 32.4
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.4e-67 261.9 544 31.8
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.2e-57 228.0 411 37.2
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.1e-55 221.5 187 54.0
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 2.7e-55 221.1 201 52.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 6.1e-55 219.9 184 55.4
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-52 211.8 195 51.8
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.4e-51 208.8 366 35.0
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 2.0e-45 188.3 192 43.2
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 5.0e-41 173.7 160 52.5
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.1e-39 168.3 561 26.9
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 7.0e-35 153.3 225 41.3
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 5.6e-32 143.7 323 33.4
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 6.1e-31 140.2 89 65.2
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.3e-25 121.7 534 28.5
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.6e-24 117.1 345 35.7
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-22 112.8 189 37.6
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.9e-20 104.0 85 54.1
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.4e-19 100.5 63 65.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.0e-19 100.1 63 61.9
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.3e-17 95.1 451 24.4
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 2.8e-15 88.2 68 57.4
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 3.6e-15 87.8 197 32.5
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.1e-14 86.3 58 62.1
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.8e-14 85.5 95 46.3
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.3e-12 79.3 96 43.8
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 6.0e-10 70.5 51 56.9
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 4.3e-08 64.3 39 66.7
TAR206G0003 Trochodendron aralioides HOM05D004666 ORTHO05D416157 5.6e-08 63.9 58 55.2


User provided reference genes

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