Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 4.3e-198 694.5 362 100.0
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 3.0e-135 485.7 294 84.7
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 5.2e-111 405.2 359 64.1
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 3.7e-109 399.1 363 67.5
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 2.2e-93 346.7 368 55.2
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 2.9e-93 346.3 371 55.0
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 5.4e-92 342.0 360 54.4
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 4.6e-91 339.0 370 55.1
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 1.0e-90 337.8 371 54.7
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 1.3e-90 337.4 367 54.2
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 7.3e-89 331.6 366 53.6
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 4.9e-85 318.9 371 54.2
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 1.9e-84 317.0 366 54.1
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 4.2e-84 315.8 379 52.2
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 9.3e-84 314.7 369 54.5
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 1.3e-80 304.3 367 53.4
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 2.4e-79 300.1 367 54.5
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 3.4e-78 296.2 381 47.2
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 3.4e-78 296.2 364 54.1
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 7.6e-78 295.0 359 51.8
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 2.9e-77 293.1 365 51.5
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 6.4e-77 292.0 359 51.3
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.4e-76 290.8 359 51.3
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 1.4e-76 290.8 366 51.4
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 1.3e-74 284.3 397 47.9
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 5.6e-73 278.9 380 47.1
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.3e-72 277.7 366 50.0
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 1.4e-71 274.2 366 50.0
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 1.4e-71 274.2 360 49.4
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.4e-71 273.5 366 49.7
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 3.1e-71 273.1 370 47.3
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 9.0e-71 271.6 366 51.1
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 1.5e-70 270.8 364 49.5
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 3.4e-70 269.6 369 49.3
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 3.4e-70 269.6 380 48.9
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 5.8e-70 268.9 371 50.4
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 1.3e-69 267.7 348 49.4
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.7e-69 267.3 388 47.9
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.9e-69 266.5 364 50.5
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.9e-69 266.5 364 50.5
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 1.4e-68 264.2 362 47.8
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.5e-68 262.3 361 49.0
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 1.3e-64 251.1 366 47.5
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.2e-64 250.4 366 47.5
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.2e-64 250.4 365 47.1
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 5.3e-63 245.7 363 47.4
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 1.2e-62 244.6 379 44.3
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 2.6e-62 243.4 364 45.6
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 1.3e-61 241.1 361 44.9
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 3.8e-61 239.6 339 48.1
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 1.1e-60 238.0 366 44.8
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 4.2e-60 236.1 370 44.9
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 5.5e-60 235.7 388 44.3
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 4.6e-59 232.6 368 44.8
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 5.1e-58 229.2 364 43.7
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 5.1e-58 229.2 340 47.1
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 5.1e-58 229.2 371 44.7
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.5e-57 227.6 372 41.9
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 3.7e-56 223.0 362 42.5
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 4.8e-56 222.6 344 45.6
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 6.3e-56 222.2 346 46.0
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 3.1e-55 219.9 374 45.5
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 1.2e-54 218.0 354 44.1
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.2e-54 218.0 369 44.7
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 2.0e-54 217.2 344 45.6
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 2.0e-54 217.2 344 45.6
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 4.5e-54 216.1 303 47.2
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 7.7e-54 215.3 369 43.6
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.0e-53 214.9 359 41.8
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 1.3e-53 214.5 380 44.2
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 1.3e-53 214.5 411 41.6
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 2.2e-53 213.8 368 43.5
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 2.9e-53 213.4 357 45.1
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 1.4e-52 211.1 362 43.1
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 1.9e-52 210.7 401 42.9
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 1.9e-52 210.7 347 44.1
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 2.7e-51 206.8 350 44.0
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 3.6e-51 206.5 362 40.6
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 6.1e-51 205.7 354 42.7
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 1.4e-50 204.5 360 40.6
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 3.9e-50 203.0 333 45.3
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 5.1e-50 202.6 343 42.9
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 9.7e-49 198.4 348 43.4
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 9.7e-49 198.4 328 44.5
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 1.3e-48 198.0 339 44.0
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 1.3e-48 198.0 365 43.3
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 1.7e-48 197.6 304 45.1
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 1.7e-48 197.6 304 45.1
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 6.3e-48 195.7 341 42.2
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 6.3e-48 195.7 339 44.0
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 8.2e-48 195.3 339 44.2
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 1.8e-47 194.1 374 40.1
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 2.4e-47 193.7 339 44.0
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 4.1e-47 193.0 339 44.5
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 9.1e-47 191.8 372 40.6
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 3.4e-46 189.9 331 40.5
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 4.5e-46 189.5 333 39.9
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 5.9e-46 189.1 368 42.9
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 1.0e-45 188.3 363 40.2
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 2.9e-45 186.8 347 42.9
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 5.0e-45 186.0 368 40.8
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 6.5e-45 185.7 375 41.3
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 1.1e-44 184.9 139 64.7
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.4e-44 184.5 365 38.9
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 1.9e-44 184.1 340 42.6
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 9.4e-44 181.8 371 40.7
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 1.2e-43 181.4 362 41.2
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 3.0e-42 176.8 363 40.2
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 3.0e-42 176.8 298 44.3
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 5.2e-42 176.0 365 42.2
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 8.8e-42 175.3 366 37.4
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 7.4e-41 172.2 369 38.5
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.1e-39 166.4 358 35.8
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 5.3e-39 166.0 363 35.8
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 7.7e-38 162.2 384 37.2
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 5.0e-37 159.5 375 37.9
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 6.5e-37 159.1 365 37.3
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 1.5e-36 157.9 366 36.6
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 1.9e-36 157.5 372 40.3
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 1.9e-36 157.5 378 36.8
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 1.9e-36 157.5 374 38.5
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 7.2e-36 155.6 342 37.1
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 1.2e-35 154.8 336 39.9
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 1.2e-35 154.8 364 36.8
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 1.6e-35 154.5 373 35.9
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 2.1e-35 154.1 366 37.2
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 2.1e-35 154.1 381 36.2
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 1.4e-34 151.4 164 56.7
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.8e-34 151.0 344 40.1
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 8.8e-34 148.7 368 37.0
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 5.7e-33 146.0 359 38.2
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 1.1e-31 141.7 373 35.9
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 2.4e-31 140.6 312 36.2
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 2.4e-31 140.6 312 36.2
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 2.4e-31 140.6 327 35.8
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 1.6e-30 137.9 390 35.1
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 2.0e-30 137.5 370 35.4
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 4.5e-30 136.3 373 36.7
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 5.0e-29 132.9 334 36.2
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 8.5e-29 132.1 342 37.7
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 1.1e-28 131.7 362 34.8
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 3.2e-28 130.2 334 36.5
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 5.5e-28 129.4 339 35.1
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 7.2e-28 129.0 331 35.6
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.2e-27 128.3 278 37.1
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 4.7e-27 126.3 334 35.0
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 6.1e-27 125.9 334 35.0
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 1.4e-26 124.8 334 34.7
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 1.4e-26 124.8 365 35.1
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 5.2e-26 122.9 336 35.7
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 5.2e-26 122.9 358 32.4
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 6.8e-26 122.5 336 35.4
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 2.0e-25 120.9 329 34.7
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 2.0e-25 120.9 329 34.7
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 2.0e-25 120.9 326 34.7
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 4.4e-25 119.8 333 34.8
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 2.2e-24 117.5 301 34.6
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 1.2e-22 111.7 337 35.3
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 1.6e-22 111.3 335 31.3
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 2.0e-22 110.9 335 31.3
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 5.9e-22 109.4 285 35.1
PSO012G0001 Papaver somniferum HOM05D003485 ORTHO05D004004 7.7e-22 109.0 160 45.0
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 1.7e-21 107.8 338 33.1
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 6.5e-21 105.9 338 30.5
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 8.6e-21 105.5 225 41.3
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.5e-20 104.0 158 53.2
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 2.8e-19 100.5 339 30.4
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 2.8e-19 100.5 339 30.4
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 1.4e-18 98.2 142 44.4
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 9.8e-17 92.0 294 33.0
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 2.0e-14 84.3 363 30.0
vmacro08822 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 3.8e-13 80.1 203 37.4
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 2.5e-12 77.4 337 30.9
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 3.3e-12 77.0 364 30.8
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 4.3e-12 76.6 259 30.5
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 4.7e-11 73.2 130 45.4
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 6.8e-10 69.3 239 35.1
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 1.2e-09 68.6 111 48.6
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 1.5e-09 68.2 156 38.5
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 8.3e-08 62.4 69 52.2
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.9e-07 61.2 246 32.9
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 2.4e-07 60.8 179 35.8


User provided reference genes

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