Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 0.0e+00 1227.2 728 100.0
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.0e-182 644.4 622 61.1
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.2e-148 530.4 650 52.0
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 8.0e-127 458.8 707 46.0
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.0e-118 431.8 617 47.6
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 4.6e-106 389.8 666 41.4
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 6.6e-105 386.0 642 44.5
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 4.3e-104 383.3 747 39.9
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 2.1e-103 380.9 613 41.8
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 5.6e-96 356.3 645 40.6
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.1e-94 352.1 661 40.4
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 3.1e-94 350.5 599 42.2
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 5.2e-94 349.7 599 42.2
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 5.8e-93 346.3 694 40.1
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 3.8e-92 343.6 600 42.5
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 1.1e-91 342.0 663 39.5
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.4e-91 341.7 660 40.2
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.4e-91 341.7 659 39.2
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.3e-89 335.1 685 37.7
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 1.5e-88 331.6 589 41.8
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.3e-88 330.5 685 37.4
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 3.3e-88 330.5 622 43.2
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 3.3e-88 330.5 642 39.7
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 5.6e-88 329.7 596 41.1
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.6e-87 328.2 674 39.2
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 6.2e-87 326.2 646 39.3
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 5.2e-86 323.2 586 40.8
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 5.2e-86 323.2 684 37.1
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 6.9e-86 322.8 703 36.7
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.5e-85 321.6 699 36.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 3.4e-85 320.5 654 37.6
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.4e-85 320.1 708 36.0
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 1.3e-84 318.5 670 38.4
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.2e-84 317.8 696 37.9
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.7e-81 308.1 697 37.3
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 8.7e-81 305.8 574 43.7
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 1.9e-80 304.7 550 43.8
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 6.2e-79 299.7 589 42.3
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.4e-78 297.7 640 35.5
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.1e-78 297.4 741 35.6
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 4.0e-78 297.0 659 37.0
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 7.6e-77 292.7 676 37.1
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.2e-76 291.2 525 42.9
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 8.4e-76 289.3 751 34.6
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 5.4e-75 286.6 509 43.4
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.1e-74 284.6 571 40.8
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.0e-73 282.3 642 36.3
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.0e-73 280.8 628 36.6
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 3.9e-73 280.4 466 44.0
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 3.9e-73 280.4 657 36.8
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.1e-73 280.0 606 37.6
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.3e-71 275.4 628 36.0
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.6e-71 275.0 632 37.2
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.8e-71 273.5 631 36.9
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 4.8e-71 273.5 642 36.1
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.2e-71 273.1 626 36.3
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.1e-70 272.3 663 36.8
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.8e-70 271.6 629 36.1
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 4.0e-70 270.4 627 34.8
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 5.3e-70 270.0 616 37.3
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 1.2e-69 268.9 620 36.5
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.2e-69 268.9 637 34.1
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.0e-69 268.1 611 35.8
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.1e-67 262.3 616 35.4
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.4e-67 261.9 625 36.3
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.4e-67 261.2 731 33.8
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.4e-67 261.2 633 38.1
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 5.5e-67 260.0 628 38.4
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 5.5e-67 260.0 635 35.1
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 6.0e-66 256.5 628 35.0
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.8e-65 255.0 621 35.6
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 5.1e-65 253.4 622 35.2
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 3.3e-64 250.8 638 35.4
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 5.6e-64 250.0 660 35.5
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.6e-63 248.4 610 35.9
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 1.7e-60 238.4 520 39.6
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.1e-59 235.7 597 36.5
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.1e-59 235.7 477 39.0
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.9e-59 235.0 595 36.1
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 3.2e-59 234.2 643 32.5
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.7e-58 231.1 477 38.2
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 4.6e-58 230.3 573 35.4
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 2.3e-57 228.0 598 31.6
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 5.1e-57 226.9 487 38.2
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 6.7e-57 226.5 645 34.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 4.3e-56 223.8 784 30.7
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 4.3e-56 223.8 471 37.6
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 2.8e-55 221.1 294 49.0
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 9.0e-54 216.1 507 37.1
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.6e-53 214.5 345 44.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.0e-52 212.6 552 33.7
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.4e-51 208.8 619 30.5
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.6e-50 205.3 588 32.1
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.3e-47 195.7 545 32.7
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.7e-47 195.3 614 32.2
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 2.2e-47 194.9 543 32.4
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 3.7e-47 194.1 621 31.6
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 6.3e-47 193.4 351 39.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 3.1e-46 191.0 589 30.7
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 2.0e-45 188.3 563 32.7
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.9e-44 184.5 608 29.8
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 3.8e-44 184.1 553 30.6
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 3.8e-44 184.1 595 32.1
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.4e-43 182.2 594 29.8
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.4e-43 182.2 594 29.8
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 3.2e-43 181.0 595 31.9
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 2.7e-42 177.9 592 30.6
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.3e-41 174.9 592 30.2
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 8.8e-41 172.9 594 30.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 2.6e-40 171.4 606 32.3
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 5.7e-40 170.2 546 32.1
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-38 166.0 460 34.8
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 2.4e-38 164.9 582 28.9
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.0e-36 157.1 609 29.4
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 6.7e-33 146.7 583 29.3
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 9.7e-32 142.9 613 28.2
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.4e-30 139.0 279 41.6
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.5e-27 128.3 671 27.1
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.5e-24 119.0 203 45.3
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.1e-22 112.8 193 45.1
Nn7g38188 Nelumbo nucifera HOM05D005926 ORTHO05D007001 7.0e-22 110.2 137 52.6
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.0e-20 106.3 352 27.6
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.6e-18 97.8 168 43.5
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 5.2e-17 94.0 290 33.8
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.2e-16 92.8 289 33.2
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 4.4e-16 90.9 361 28.0
Os01g0857600 Oryza sativa ssp. japonica HOM05D067701 ORTHO05D007001 2.5e-11 75.1 309 29.1
Os04g0646000 Oryza sativa ssp. japonica HOM05D067701 ORTHO05D007001 5.2e-09 67.4 257 30.0
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 6.8e-09 67.0 332 30.7
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 4.1e-06 57.8 111 42.3
SEGI_03290 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 4.1e-06 57.8 201 30.3
Pp3c5_26610 Physcomitrium patens HOM05D031130 ORTHO05D019295 9.2e-06 56.6 90 42.2


User provided reference genes

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