Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.3e-138 494.6 240 100.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.4e-122 441.4 230 90.4
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.2e-92 343.6 230 70.9
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.3e-85 317.8 210 67.6
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.6e-84 316.6 218 64.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.1e-84 316.2 233 66.1
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.0e-82 309.7 221 67.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.4e-82 308.5 218 65.6
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 4.9e-81 305.1 216 67.1
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.1e-80 303.9 230 63.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.9e-80 303.1 208 65.9
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 2.4e-80 302.8 201 67.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 5.4e-80 301.6 209 66.0
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 7.0e-80 301.2 219 64.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.2e-79 300.4 225 64.9
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.6e-79 300.1 214 64.5
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 3.5e-79 298.9 232 63.4
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 7.8e-79 297.7 231 60.6
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 7.8e-79 297.7 209 63.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 7.8e-79 297.7 210 63.3
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.7e-78 296.6 233 59.2
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.7e-78 296.6 210 61.4
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.3e-78 296.2 237 57.4
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 8.6e-78 294.3 230 62.6
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.5e-77 293.5 230 60.0
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.5e-77 293.5 233 57.5
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.5e-77 292.7 228 58.8
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.3e-77 292.4 214 60.7
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 4.3e-77 292.0 222 62.2
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.3e-77 292.0 215 61.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 9.5e-77 290.8 205 63.4
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.1e-76 289.7 228 59.2
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.1e-76 289.7 224 60.3
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 6.2e-76 288.1 205 62.9
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-75 287.0 231 61.5
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.4e-75 287.0 230 57.8
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.1e-75 285.8 214 57.9
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 5.2e-75 285.0 223 58.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.8e-75 284.6 214 57.5
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 8.9e-75 284.3 215 61.4
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.2e-74 283.9 235 59.1
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.5e-74 283.5 216 60.6
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.0e-74 283.1 231 57.6
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.6e-74 282.7 213 59.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.4e-74 282.3 215 61.4
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.2e-73 279.6 214 57.0
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.2e-73 279.6 231 55.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.9e-73 279.3 228 58.8
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.9e-73 279.3 215 61.4
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 4.9e-73 278.5 209 61.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 4.9e-73 278.5 227 55.1
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 6.4e-73 278.1 231 55.0
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 6.4e-73 278.1 237 54.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.1e-72 277.3 222 55.9
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.9e-72 276.6 234 57.7
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.2e-72 275.8 221 59.7
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 9.2e-72 274.2 212 59.4
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.2e-71 273.9 230 57.4
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.6e-71 273.5 200 60.5
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.6e-71 273.5 232 56.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 7.8e-71 271.2 229 54.6
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 7.8e-71 271.2 214 60.3
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.0e-70 270.8 216 56.5
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.3e-70 270.4 204 61.8
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-70 270.4 231 53.7
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 6.6e-70 268.1 218 56.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.1e-69 267.3 229 53.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-69 267.3 229 55.0
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.5e-69 266.9 206 58.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-69 266.9 207 60.4
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.9e-69 266.5 211 56.4
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 3.3e-69 265.8 211 57.3
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.3e-69 265.8 221 53.4
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.3e-69 265.4 242 57.9
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 5.6e-69 265.0 201 57.2
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 7.3e-69 264.6 189 64.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.7e-68 261.9 216 60.2
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 8.1e-68 261.2 217 54.4
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-67 260.4 205 55.6
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.4e-67 260.4 205 55.6
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.4e-67 260.4 229 53.3
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.3e-67 259.6 229 53.3
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.3e-67 259.6 223 52.9
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.1e-67 259.2 228 52.6
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.1e-67 259.2 228 52.6
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 4.0e-67 258.8 228 53.9
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.0e-67 258.8 228 52.6
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 4.0e-67 258.8 228 53.9
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 5.2e-67 258.5 177 67.2
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.9e-67 257.7 210 54.8
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-66 257.3 204 60.3
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.5e-66 256.9 230 53.0
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.7e-65 253.4 187 61.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.9e-65 252.7 215 56.7
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 4.9e-65 251.9 229 53.3
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 6.4e-65 251.5 231 51.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 6.4e-65 251.5 201 55.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 8.4e-65 251.1 255 51.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-64 250.4 230 50.4
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-64 250.4 239 55.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 5.4e-64 248.4 212 53.8
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 6.0e-63 245.0 209 52.6
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 3.9e-62 242.3 165 66.1
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.6e-61 238.4 231 51.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 7.3e-61 238.0 208 51.9
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 7.3e-61 238.0 207 58.0
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.2e-60 237.3 174 61.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.1e-60 236.5 208 55.8
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.4e-59 233.8 180 58.3
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.8e-59 233.4 187 54.5
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-57 227.3 252 44.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.7e-57 226.9 232 52.6
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 4.9e-57 225.3 208 52.9
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.1e-56 224.2 205 53.2
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 5.4e-56 221.9 174 59.8
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.5e-55 219.2 198 55.1
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 3.0e-54 216.1 185 49.7
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.6e-54 214.9 260 47.3
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 8.7e-54 214.5 153 62.7
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 4.8e-52 208.8 169 59.2
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.9e-48 196.8 254 42.1
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.6e-47 193.7 209 48.3
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.2e-44 181.8 231 43.7
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 6.2e-44 181.8 199 42.2
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.3e-43 178.7 227 43.2
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 4.5e-42 175.6 141 60.3
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 7.1e-40 168.3 175 49.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.2e-39 167.5 187 39.6
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.1e-37 161.0 108 61.1
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.6e-36 157.1 128 48.4
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 5.1e-30 135.6 162 42.6
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.5e-26 124.0 107 51.4
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.9e-24 117.1 79 55.7
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.6e-23 112.8 70 67.1
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.3e-20 104.4 82 58.5
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.2e-20 103.6 101 54.5
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.9e-18 95.5 101 52.5
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.3e-17 94.4 117 49.6
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 3.2e-16 89.7 63 57.1
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.7e-15 86.7 59 62.7
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 7.9e-15 85.1 54 63.0
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.0e-14 84.7 78 52.6
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.9e-14 82.8 86 52.3
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 5.1e-14 82.4 63 52.4
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 8.8e-14 81.6 56 60.7
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 4.8e-12 75.9 65 49.2
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.4e-11 73.6 50 66.0
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 3.4e-10 69.7 131 34.4
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 7.7e-10 68.6 52 59.6
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.5e-08 63.5 31 74.2
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.5e-08 63.5 51 56.9
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 1.2e-07 61.2 119 32.8
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.9e-06 56.2 52 51.9


User provided reference genes

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