Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 1.3e-74 283.1 152 100.0
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.6e-35 152.5 152 59.2
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 9.4e-30 134.0 116 65.5
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 2.3e-28 129.4 165 50.9
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 8.8e-28 127.5 148 51.4
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 7.5e-27 124.4 147 57.1
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 8.3e-26 120.9 157 50.3
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 8.3e-26 120.9 143 53.8
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.7e-24 115.9 118 52.5
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 3.5e-24 115.5 164 48.2
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 1.7e-23 113.2 149 49.7
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.2e-23 112.8 158 49.4
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 2.9e-23 112.5 160 48.8
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 2.9e-23 112.5 168 44.6
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 5.0e-23 111.7 132 56.1
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 5.0e-23 111.7 160 51.2
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 6.5e-23 111.3 123 51.2
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 6.5e-23 111.3 132 50.0
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 6.5e-23 111.3 156 50.0
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 6.5e-23 111.3 156 50.0
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 1.1e-22 110.5 144 51.4
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 1.5e-22 110.2 153 51.0
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 3.2e-22 109.0 159 49.7
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 5.5e-22 108.2 115 58.3
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 7.2e-22 107.8 111 55.9
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 1.6e-21 106.7 141 48.9
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 2.1e-21 106.3 163 47.9
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 3.6e-21 105.5 170 44.1
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 4.7e-21 105.1 125 52.8
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 6.1e-21 104.8 137 50.4
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 8.0e-21 104.4 168 48.2
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.4e-20 103.6 153 49.0
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.8e-20 103.2 92 65.2
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 2.3e-20 102.8 151 45.0
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 3.0e-20 102.4 113 60.2
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 3.0e-20 102.4 152 47.4
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 5.2e-20 101.7 124 51.6
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 6.8e-20 101.3 111 58.6
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 8.8e-20 100.9 147 48.3
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 8.8e-20 100.9 158 46.2
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 1.2e-19 100.5 134 50.7
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 1.5e-19 100.1 78 73.1
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.5e-19 100.1 134 50.7
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 3.4e-19 99.0 72 73.6
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 4.4e-19 98.6 133 48.9
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 5.7e-19 98.2 75 69.3
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 5.7e-19 98.2 139 50.4
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 5.7e-19 98.2 109 56.0
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 2.2e-18 96.3 167 46.1
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 4.9e-18 95.1 151 47.7
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 4.9e-18 95.1 112 51.8
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 6.3e-18 94.7 75 66.7
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 6.3e-18 94.7 115 51.3
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 6.3e-18 94.7 148 45.3
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 8.3e-18 94.4 77 71.4
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.4e-17 93.6 97 60.8
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 2.4e-17 92.8 126 50.0
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 4.1e-17 92.0 95 64.2
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 4.1e-17 92.0 95 64.2
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 7.0e-17 91.3 64 81.2
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 7.0e-17 91.3 64 81.2
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 9.2e-17 90.9 76 69.7
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 1.2e-16 90.5 68 72.1
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.2e-16 90.5 69 72.5
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 1.6e-16 90.1 147 44.2
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 3.5e-16 89.0 67 67.2
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 7.8e-16 87.8 113 54.0
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.7e-15 86.7 152 44.7
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 6.6e-15 84.7 97 57.7
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 4.3e-14 82.0 130 48.5
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 5.6e-14 81.6 70 60.0
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 9.5e-14 80.9 73 65.8
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 9.5e-14 80.9 73 65.8
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 9.5e-14 80.9 125 42.4
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 9.5e-14 80.9 60 71.7
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 1.2e-13 80.5 112 51.8
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 1.2e-13 80.5 112 51.8
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.6e-13 80.1 98 46.9
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 6.1e-13 78.2 73 64.4
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 1.0e-12 77.4 124 41.9
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 2.3e-12 76.3 75 66.7
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 2.3e-12 76.3 106 46.2
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 5.2e-12 75.1 75 65.3
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 1.2e-11 73.9 61 60.7
MBI17_g15050_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 3.4e-11 72.4 108 40.7
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 4.4e-11 72.0 78 53.8
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 9.8e-11 70.9 72 52.8
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 6.4e-10 68.2 95 43.2
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 9.2e-09 64.3 64 56.2
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 3.5e-08 62.4 136 36.8
DCAR_006372 Daucus carota HOM05D007680 ORTHO05D009702 2.3e-07 59.7 110 38.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.0e-07 59.3 56 46.4
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 1.5e-06 57.0 123 39.0
Pp3c21_1480 Physcomitrium patens HOM05D007680 ORTHO05D009702 9.5e-06 54.3 65 44.6


User provided reference genes

Program Settings