Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 3.3e-198 694.9 362 100.0
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.3e-149 533.5 353 76.5
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.3e-138 496.9 359 71.3
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 2.2e-138 496.1 359 71.3
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 3.8e-130 468.8 352 68.2
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 4.0e-127 458.8 347 68.6
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 1.3e-125 453.8 363 65.8
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.2e-117 426.4 379 61.7
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.6e-114 414.8 340 62.1
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.6e-114 414.8 340 62.1
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.6e-114 414.8 340 62.1
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.6e-114 414.8 340 62.1
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 6.8e-111 404.8 340 60.0
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.2e-110 404.1 340 61.2
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 4.4e-110 402.1 327 62.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 4.4e-110 402.1 327 62.1
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 4.4e-110 402.1 350 60.6
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 5.8e-110 401.7 336 61.3
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.7e-109 399.1 350 62.3
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 4.9e-109 398.7 355 58.3
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 7.1e-108 394.8 355 60.6
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 9.2e-108 394.4 349 58.5
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.7e-106 390.2 327 61.2
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.9e-106 389.0 359 57.9
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 6.6e-106 388.3 349 57.6
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.1e-105 387.5 356 57.0
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.1e-105 387.5 359 57.9
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 5.6e-105 385.2 341 59.2
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 9.5e-105 384.4 353 57.5
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 1.2e-104 384.0 353 57.5
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.2e-104 384.0 352 58.5
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.6e-104 383.6 350 58.0
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 8.1e-104 381.3 354 55.9
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 5.2e-103 378.6 344 59.6
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 2.0e-102 376.7 345 57.1
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.0e-102 376.7 358 58.1
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 2.6e-102 376.3 353 56.7
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 3.4e-102 375.9 337 57.3
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.4e-102 375.6 352 55.1
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.2e-101 373.2 344 55.8
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.2e-101 373.2 341 60.7
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.4e-100 370.5 335 58.5
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 5.4e-100 368.6 350 56.3
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 7.1e-100 368.2 352 54.5
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 9.2e-100 367.9 346 54.9
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.2e-99 367.5 364 55.8
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.2e-99 367.5 362 54.4
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 1.6e-99 367.1 346 59.5
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 1.6e-99 367.1 391 53.5
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 2.1e-99 366.7 349 56.7
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 2.1e-99 366.7 357 55.2
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 2.1e-99 366.7 336 56.8
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.7e-99 366.3 348 58.0
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 4.6e-99 365.5 362 56.4
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 6.0e-99 365.2 337 55.2
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 7.8e-99 364.8 350 55.4
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 2.3e-98 363.2 348 56.9
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 3.0e-98 362.8 348 57.8
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 3.3e-97 359.4 359 55.7
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 4.3e-97 359.0 341 56.6
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 5.6e-97 358.6 341 56.0
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 9.6e-97 357.8 354 55.1
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 9.6e-97 357.8 333 57.7
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.6e-96 357.1 384 51.3
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 2.8e-96 356.3 341 56.0
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 8.1e-96 354.8 311 59.8
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.1e-95 354.4 340 55.0
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 2.4e-95 353.2 353 54.1
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 5.2e-95 352.1 336 55.1
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 6.9e-95 351.7 340 56.2
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 1.5e-94 350.5 350 52.6
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 2.6e-94 349.7 335 57.3
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 4.4e-94 349.0 337 55.5
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 5.8e-94 348.6 335 54.9
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 5.8e-94 348.6 331 55.9
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 9.9e-94 347.8 370 52.7
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.3e-93 347.4 337 55.2
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.7e-93 347.1 370 52.2
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.7e-93 347.1 370 52.2
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 3.8e-93 345.9 336 55.4
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 4.9e-93 345.5 340 54.4
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.9e-92 343.6 365 52.1
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.4e-92 343.2 347 53.3
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 3.2e-92 342.8 356 52.2
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 3.2e-92 342.8 357 53.2
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 4.2e-92 342.4 357 53.2
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-91 340.9 344 53.5
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 7.8e-91 338.2 356 51.7
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 1.1e-89 334.3 341 52.8
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.8e-87 327.0 339 53.7
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.8e-87 327.0 335 54.6
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 6.4e-85 318.5 345 50.7
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 6.0e-83 312.0 337 52.5
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.3e-82 310.8 350 48.6
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.9e-81 307.0 327 49.2
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.6e-80 303.9 353 47.3
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 4.2e-76 289.3 342 48.8
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 2.8e-72 276.6 332 47.3
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.4e-70 269.6 182 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 6.5e-69 265.4 356 41.0
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 7.9e-67 258.5 328 43.3
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 4.1e-63 246.1 207 57.5
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 6.9e-63 245.4 349 40.4
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 1.7e-61 240.7 311 45.3
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 6.5e-61 238.8 202 55.9
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 3.2e-60 236.5 343 40.8
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 2.7e-59 233.4 172 61.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 8.2e-56 221.9 360 37.5
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 7.2e-52 208.8 352 40.6
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 2.1e-51 207.2 244 48.4
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.6e-49 200.3 131 69.5
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 6.3e-48 195.7 351 36.5
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 5.3e-47 192.6 259 47.1
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 9.1e-47 191.8 332 40.4
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 9.4e-44 181.8 165 53.3
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.6e-43 181.0 130 62.3
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.1e-41 174.9 332 38.6
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.3e-37 161.4 325 35.7
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.9e-37 160.2 138 63.0
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.9e-36 157.5 349 31.8
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 5.5e-36 156.0 213 45.1
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 1.0e-29 135.2 363 28.4
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.2e-27 128.3 139 51.1
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.0e-25 120.9 141 49.6
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 5.4e-23 112.8 86 61.6
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 5.4e-23 112.8 74 71.6
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.6e-19 101.3 91 58.2
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 1.0e-18 98.6 77 63.6
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 3.8e-13 80.1 70 57.1
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.5e-12 78.2 167 27.5
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 4.0e-10 70.1 103 36.9
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 2.6e-09 67.4 180 35.0
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 9.8e-09 65.5 382 22.8
Nn5g30099 Nelumbo nucifera HOM05D005879 ORTHO05D278235 1.2e-06 58.5 51 54.9
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.6e-06 58.2 58 50.0


User provided reference genes

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