Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.3e-48 196.1 96 100.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 9.5e-20 100.1 97 53.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.6e-19 98.2 96 51.0
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.1e-18 96.7 98 54.1
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-18 95.9 96 50.0
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.3e-18 95.5 98 58.2
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.0e-18 94.7 96 51.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.2e-18 94.4 97 53.6
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 6.8e-18 94.0 96 49.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.6e-17 92.0 96 54.2
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 4.4e-17 91.3 97 50.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.8e-17 90.9 97 50.5
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 7.6e-17 90.5 86 50.0
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 7.6e-17 90.5 96 50.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 9.9e-17 90.1 62 64.5
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.7e-16 89.4 94 52.1
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-16 89.4 96 50.0
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.2e-16 89.0 96 45.8
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.7e-16 88.2 85 50.6
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.9e-16 87.8 64 60.9
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-15 86.7 98 51.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.1e-15 86.7 88 50.0
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-15 86.3 98 51.0
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-15 86.3 98 51.0
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.9e-15 85.9 89 51.7
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.4e-15 85.5 62 61.3
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.2e-15 85.1 96 49.0
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.1e-15 84.7 86 48.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.4e-15 84.3 97 47.4
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.4e-15 84.3 97 51.5
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 7.1e-15 84.0 106 43.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.2e-15 83.6 97 48.5
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.2e-14 83.2 94 52.1
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.2e-14 83.2 99 50.5
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-14 83.2 91 57.1
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.2e-14 83.2 98 52.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.7e-14 82.0 96 52.1
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.7e-14 82.0 96 52.1
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.7e-14 82.0 108 48.1
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 3.5e-14 81.6 96 53.1
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 3.5e-14 81.6 96 52.1
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.5e-14 81.6 91 52.7
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.6e-14 81.3 97 47.4
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.0e-14 80.9 97 46.4
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 6.0e-14 80.9 88 50.0
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.0e-14 80.9 96 49.0
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.8e-14 80.5 100 50.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 7.8e-14 80.5 98 50.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.0e-13 80.1 97 46.4
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.3e-13 79.7 92 50.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.3e-13 79.7 97 46.4
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.7e-13 79.3 89 51.7
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.3e-13 79.0 98 48.0
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.3e-13 79.0 98 49.0
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.0e-13 78.6 83 47.0
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 3.9e-13 78.2 96 45.8
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 3.9e-13 78.2 86 54.7
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 6.6e-13 77.4 96 47.9
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.6e-13 77.4 82 52.4
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 6.6e-13 77.4 82 48.8
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 8.6e-13 77.0 95 48.4
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 8.6e-13 77.0 83 50.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.1e-12 76.6 97 48.5
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.1e-12 76.6 105 42.9
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-12 76.6 88 51.1
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.1e-12 76.6 96 52.1
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.5e-12 76.3 97 52.6
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-12 76.3 88 50.0
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.5e-12 76.3 96 40.6
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.5e-12 76.3 96 50.0
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.5e-12 75.5 97 50.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.5e-12 75.5 99 47.5
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 2.5e-12 75.5 88 50.0
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.5e-12 75.5 99 44.4
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 2.5e-12 75.5 89 51.7
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.3e-12 75.1 79 51.9
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 4.3e-12 74.7 97 45.4
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.3e-12 74.7 86 50.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 4.3e-12 74.7 96 46.9
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 5.6e-12 74.3 98 48.0
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 5.6e-12 74.3 94 42.6
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 7.3e-12 73.9 87 44.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 9.6e-12 73.6 99 48.5
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-11 73.2 99 47.5
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.2e-11 73.2 96 43.8
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.2e-11 73.2 100 51.0
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.6e-11 72.8 98 50.0
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.6e-11 72.8 99 43.4
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 1.6e-11 72.8 101 48.5
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.6e-11 72.8 93 48.4
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 2.1e-11 72.4 99 47.5
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.1e-11 72.4 98 48.0
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.1e-11 72.4 88 44.3
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 2.8e-11 72.0 98 48.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.6e-11 71.6 87 47.1
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 3.6e-11 71.6 95 43.2
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.7e-11 71.2 96 45.8
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 4.7e-11 71.2 97 45.4
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.7e-11 71.2 89 49.4
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.2e-11 70.9 96 46.9
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.2e-11 70.9 96 45.8
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 6.2e-11 70.9 77 49.4
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-10 70.1 96 44.8
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-10 69.7 87 50.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.4e-10 69.7 95 45.3
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.4e-10 69.7 101 43.6
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 92 43.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 2.4e-10 68.9 82 45.1
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.4e-10 68.9 71 50.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 3.1e-10 68.6 87 46.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 3.1e-10 68.6 87 46.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.1e-10 68.6 88 44.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 3.1e-10 68.6 86 43.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.0e-10 68.2 87 44.8
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 4.0e-10 68.2 103 42.7
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 4.0e-10 68.2 96 44.8
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.0e-10 68.2 97 41.2
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.0e-10 68.2 83 45.8
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.2e-10 67.8 87 43.7
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 5.2e-10 67.8 91 42.9
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 6.8e-10 67.4 41 70.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.8e-10 67.4 83 49.4
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 6.8e-10 67.4 92 42.4
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 8.9e-10 67.0 86 45.3
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-09 66.6 92 42.4
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.2e-09 66.6 92 42.4
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-09 66.6 87 44.8
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-09 66.6 87 44.8
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 1.2e-09 66.6 91 45.1
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.2e-09 66.6 94 38.3
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.5e-09 66.2 98 40.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.5e-09 66.2 85 43.5
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 61 50.8
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.5e-09 66.2 90 42.2
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.5e-09 66.2 87 47.1
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.0e-09 65.9 92 42.4
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 2.0e-09 65.9 92 42.4
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 2.0e-09 65.9 92 42.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-09 64.7 95 42.1
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-09 64.7 95 42.1
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-09 64.7 92 42.4
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.8e-09 64.3 86 43.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.8e-09 64.3 87 42.5
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.8e-09 64.3 87 42.5
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 5.8e-09 64.3 92 44.6
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 7.6e-09 63.9 95 42.1
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 7.6e-09 63.9 100 41.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 7.6e-09 63.9 96 39.6
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 7.6e-09 63.9 87 44.8
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 9.9e-09 63.5 89 44.9
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.7e-08 62.8 85 38.8
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.2e-08 62.4 85 38.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.2e-08 62.4 85 38.8
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.9e-08 62.0 41 61.0
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.8e-08 61.6 40 65.0
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 6.4e-08 60.8 107 43.0
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 6.4e-08 60.8 36 69.4
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 8.4e-08 60.5 87 43.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.1e-07 60.1 38 68.4
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.1e-07 60.1 64 50.0
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 91 37.4
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.4e-07 59.7 36 69.4
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.9e-07 59.3 91 45.1
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.9e-07 59.3 37 75.7
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 35 68.6
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 87 42.5
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-07 58.5 87 41.4
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 3.2e-07 58.5 76 44.7
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 5.4e-07 57.8 101 40.6
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 5.4e-07 57.8 95 42.1
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 7.1e-07 57.4 86 38.4
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.1e-07 57.4 85 42.4
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.3e-07 57.0 98 38.8
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 103 37.9
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.1e-06 55.8 33 72.7
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.1e-06 55.8 38 68.4
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 4.6e-06 54.7 33 66.7
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 7.8e-06 53.9 33 66.7


User provided reference genes

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